|
Name : lysS (HH1666) Accession : NP_861197.1 Strain : Helicobacter hepaticus ATCC 51449 Genome accession: NC_004917 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1594267 - 1595823 bp Length : 1557 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTTTTCAAATTTTTATGTTCAACAACGTATAAAAAAAATGGAACTTATGCGACAAGAAGGCTTTAATCCTTATGCTAA TAAAACTACACGCACTATCAGTAATTACAATTTTTTAAATAAATATAATCATCTCAAAATGCAATCTTCAGATGATACGC AAGATTGTACGCAAAATAAAGAGATTGAAAGCATTGTAGGACGTGTGCGTTTTATCCGTCTAATGGGAAAAGCGTGCTTT ATTAAGATTCAAGATGAAAGTGGTATCCTTCAAGCTTATGTATCAAAAAATGATATTGGAGAAGACTTTTTATTGATTAA AAAAGTGCTTGAAGTTGGGGATATTATCAATGTAAGTGGTTATGCTTTTGTAACCAAAACCGGTGAATTAAGTATCCACA CACTTACATTGCAAATACTTACCAAAAGTATCGTCCCACTCCCAGAAAAATTTCACGGACTAAATGATATTGAGCTACGT TATCGCCAACGTTATGTAGATTTAATCGTTAATAACAAAGTTAAAGAAACTTTTAAACTGCGTAGCCAAATTGTCTCGTG CATACGACAATTTTTTGAGCAAAAAGGATTCTTAGAAGTGGAAACACCTATGCTCCATTCTATTCCTGGCGGAGCAAATG CGCGCCCTTTCATCACTCATCATAATGCACTTGATGTAGATAGATATCTACGAATTGCGCCCGAACTTTATCTCAAACGT CTTATTGTAGGGGGATTTGAAGCTATTTTTGAACTCAATCGTAATTTTCGCAATGAAGGTATGGATCATTCACATAATCC AGAATTTAGTATGATTGAATTTTATTGGGCATATAAGACTTATGAAGACCTCATTACACTTACCCAAGAACTTTTTGCTT TCTTATTTAAAAAACTCAACTTACCGCATAGTTTGATACACGATGAGTTAGAAATTGATTTCTCACAATGGCACATTATA GGCTACAAAGAAGCATTAATTAAAATTGGTGGTTTAGATAAAAATATCATTGATAATCAAGACGCACTCCTTAGCTTCCT TATGAGCAAACATCTTAAGGTAGATAAGAGTATGTCTTATGGCAAACTTTTAGGCGAAGCTTTTGATGAATTTGTTGAAC ATAAACTCATCAATCCGACTTTTATCACGCAATATCCCATTGAAATTAGCCCTTTAGCTCGGCGTAATGATGAGAATCCA AATGTTGCTGATAGATTTGAGTTATTCATCGGTGGTAAGGAAATTGCCAATGGTTTTAGTGAGCTTAATGACCCAATCGA CCAATTTGAGAGATTCAAAGAGCAAGCCAAGGCAAAAGATGCGGGAGATGAAGAAGCGCAGTATATGGACGAAGATTATG TATGGGCACTTGCGCACGGTATGCCACCTACTGCTGGAGAAGGCATAGGTATTGATAGATTAGTAATGCTTTTAAGCAAT GCAAAAACAATTAAAGATGTAATTTTATTTCCTGCATTAAAGCCAACTAAATCAAATTTTGATATAATACTTTCTCAAGA CGCATTATCTAATGCTCAAATAATCAAGGAGAACTAA Protein sequence : MFSNFYVQQRIKKMELMRQEGFNPYANKTTRTISNYNFLNKYNHLKMQSSDDTQDCTQNKEIESIVGRVRFIRLMGKACF IKIQDESGILQAYVSKNDIGEDFLLIKKVLEVGDIINVSGYAFVTKTGELSIHTLTLQILTKSIVPLPEKFHGLNDIELR YRQRYVDLIVNNKVKETFKLRSQIVSCIRQFFEQKGFLEVETPMLHSIPGGANARPFITHHNALDVDRYLRIAPELYLKR LIVGGFEAIFELNRNFRNEGMDHSHNPEFSMIEFYWAYKTYEDLITLTQELFAFLFKKLNLPHSLIHDELEIDFSQWHII GYKEALIKIGGLDKNIIDNQDALLSFLMSKHLKVDKSMSYGKLLGEAFDEFVEHKLINPTFITQYPIEISPLARRNDENP NVADRFELFIGGKEIANGFSELNDPIDQFERFKEQAKAKDAGDEEAQYMDEDYVWALAHGMPPTAGEGIGIDRLVMLLSN AKTIKDVILFPALKPTKSNFDIILSQDALSNAQIIKEN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-106 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | NP_861197.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-106 | 56 |
