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Name : serS (HH1490) Accession : NP_861021.1 Strain : Helicobacter hepaticus ATCC 51449 Genome accession: NC_004917 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1426404 - 1427672 bp Length : 1269 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGATTGATACAAAGGCATTGATAAATCAATTTGATGAAATAAAATCGCGACTTGCAATTAAAAAAGTAAGTGAAGAAAC ATTGAGTGCTCTTAAAGATATGGCTCTTAAATATAAATCCTGCAAACAGGAGCTTGAAGAGTTACAAGCTTTTCAAAATA AAACTTCAAAACTTTTTGGCGAATATAAAAGAGAGCAAAAAGATATTACAGCACTTAAAGTGGCGCTTGATGAGAATAAA GTTAAGATGAGCACTTTAGAATCTACGCTAAAAGAGATAGAATCACATTTAGAAACACTTGCTTATGGGATACCGAATCT ACCTGATGATGCCACGCCAGAGGGTGAGGATGAGAATGATAATGTTGAAATTAAAAAAGTGCTCTCTCCTCCACATTTTG ATTTTGTTCCTAAAGAGCATTGGGAACTTGGTATTGCAAATGGTTGGATTGATTTTGAAGCAGGAGTAAAACTTGCTAAA AGTCGTTTTAGTGTGTTGCGTGGAATGGGAGCAAAACTCAATCGCGCACTTATTAATTTTATGTTAGATTATAATGAAAA AGCAGGTTTTGAATCTATTGTAACACCCGTAATTGTTAATGCACGAGCACTTTTTGGCACAGGACAGCTTCCAAAGTTTG AAGAAGATATGTTTAAAGTAGATTCTCATTTTTGTGATGAACAAAGTGAGCACGATTTGTATCTTATCTCTACTTCAGAA ATTACGCTTACTAATCTCTATCAAGATAGTATTATTCCAAGTGAGGAACTACCTATTATGCTCACAGCTCAAACACCTTG TTTTCGTAAAGAAGCGGGAAGTGCAGGGCGAGATACGCGGGGTATGATACGCCAACATCAGTTTGATAAAGTTGAGCTTG TGGCTATTACTCACCCAACCCAAAGTGCAGCAATGCAGGAGAAAATGGTGCAAACAGCAAGCGAGATTTTAAGTGAGCTT AAGCTTCCACATCGTTTAATGCAGTTATGTGGTGGTGATTTGGGCTTTAGTGCAAGTAATACCATTGATATTGAAGTGTG GCTTCCGGGACAAAATTGTTATCGTGAGATTAGCTCTATATCAAATACGCGTGATTTTCAAGCTCGTAGAGCGAAGATTC GTTACAAAGAAAATGGTAAAAATGCCCTTGTGCATACACTTAATGGTTCATCTTTGGCAGTAGGACGCACACTTATTGCA ATTATGGAAAATTATCAGCAAGTAGATGGGAGTGTAATGATTCCTGAAGTGCTACAAAAGTATCTATAA Protein sequence : MIDTKALINQFDEIKSRLAIKKVSEETLSALKDMALKYKSCKQELEELQAFQNKTSKLFGEYKREQKDITALKVALDENK VKMSTLESTLKEIESHLETLAYGIPNLPDDATPEGEDENDNVEIKKVLSPPHFDFVPKEHWELGIANGWIDFEAGVKLAK SRFSVLRGMGAKLNRALINFMLDYNEKAGFESIVTPVIVNARALFGTGQLPKFEEDMFKVDSHFCDEQSEHDLYLISTSE ITLTNLYQDSIIPSEELPIMLTAQTPCFRKEAGSAGRDTRGMIRQHQFDKVELVAITHPTQSAAMQEKMVQTASEILSEL KLPHRLMQLCGGDLGFSASNTIDIEVWLPGQNCYREISSISNTRDFQARRAKIRYKENGKNALVHTLNGSSLAVGRTLIA IMENYQQVDGSVMIPEVLQKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 5e-89 | 47 |
