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Name : clpA (HH0109) Accession : NP_859640.1 Strain : Helicobacter hepaticus ATCC 51449 Genome accession: NC_004917 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ClpA Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : 3.1.21.- Position : 106821 - 109400 bp Length : 2580 bp Strand : - Note : ATP-binding subunit DNA sequence : ATGAATTTATTTGAAAAATTAACAAACCAAATGAAAGAAACGCTTGATAGTGCAGCTTCGCTTGCCTTACATTCAAGTAA TCAAGAAATTTCTCTTGCACATATATATTGGGCGCTTTTAAGTAATCATCAAAGTGTGCTCAATCAGGCTTTGAATAAAA TGAATATTGATAAAACTGCGCTTGAGCTTCAAGCGCGCAGTGAAGTAGATAAACTTCCCAAAAGCTCACAGGTGCAAAAA GAGAATCTAAGTATCAGTAAAGAGCTTTCAAGTGCGCTTAATCTTGCTCAAGGCGAGGCAATTAAGAATGGTGATAGTTT TATTGCAGTAGATATGTTTTTAATCGCTAATCTTAAAGAGAGCACTTTTGTAGCTATATTTAAGCCTCTTGTGGATATTG CAGAGTTTAAAAAGACATTACTAAGTCTAAGAGGGGAGAGCAAGATAGAATCTCAAAGTGGTGATGATAATTTGGAATCT TTAAGTAAATTTGGCATTGATTTAACCCAAAAAGCATTAGAAAACACTCTTGACCCTGTTATAGGGCGCGATGATGAGAT TAATGCAATGATGCAGATTCTCATACGTAAAAGTAAAAATAATCCTATTTTATTGGGAGAGCCAGGTGTGGGAAAAACTG CTGTGGTAGAGGGTTTAGCACAGCGAATTGTGGCAAAGGCTGTGCCTACAAGTTTGCAGAATAAAAAGCTCATTGCCCTT GATATGAGCGCACTTATTGCTGGAGCAAAATATCGCGGAGAGTTTGAAGAACGACTTAAAAATGTTGTTGATGAAGTGAA AAAAGCTGGAAATATTATTTTATTTATTGATGAGATTCACACTATTGTGGGTGCTGGGGCAAGTGAAGGGAGTATGGACG CAGCAAATATACTTAAACCTGCTCTTGCACGAGGGGAGCTTCACACTATTGGTGCAACTACGTTAAAGGAGTATCGCAAG TATTTTGAAAAAGATGCTGCACTTACACGGCGATTTCAGCCTATAAATGTCAATGAACCAAGCATTAATGAGGCATTACA AATTTTGCGAGGGATTAAGCCAAATTTAGAGGCGCACCATAATGTCAATATTACAGATGCTGCACTTGTAGCAGCAGCCA AGCTTTCAAGTCGATATATTACCGATAGGTTTTTGCCTGATAAGGCGATTGATTTGATTGATGAGGCAGCAGCAGAGCTG AAGATGCAAATAGAATCTGAACCCTTAGAGCTAAGCAAGATTAAAAAACACATTGCCAATCTTGAAGTTGAAAAACAAGC ACTCAATATGGAAAAAACAAATGTCAATGAGGCGCGTGTGCTAGAGATTGATAAGGAATTGGAGAATTTGCGTGAGGAAA AAATGAGCTTAGAGGGCAAATTTGAGCAAGAAAAGAGCGTTTTTACGCGTATTGCTACAATAAAAGCGGAGCTTGATAGC CTAAAAAGAGAATCTGAACTTGCTAAACGAAGTGGAGATTATAACAAAGCGGCTGAAATTGATTATGGTAAAATCCCTGA TATTCAGGCACAGGAAGCAGCCTTGCATAAACAATGGGAAGAAATGCAGCAAAATGGCACTTTGCTTAAAAATGCTGTTA CACAAGAGAGTATTGCGGGAGTTGTTAGTCGCTGGAGTGGGATTCCAATTAAAAAAATGCTCCAAAGCCAAAAGGAGCGC ATTTTAGGCATAGAATCTGAACTTGCCAAAAGTGTAGTAGGACAAGATGATGCAATAAAAGCCATTGCTAGAGCAATCAA ACGCAATAAAGCCGGATTAAATGATGCCTCTCGCCCTATTGGGAGCTTTTTATTTTTAGGACCAACAGGTGTAGGTAAAA CACAATGTGCAAAAACTTTAGCAGAGTTTTTATTTGATAATGCCAAATCACTTGTGCGTATTGATATGAGTGAATATATG GAAAAACACGCTGTAAGTAGGCTTGTAGGAGCACCTCCGGGCTATGTAGGCTATGAAGAAGGTGGCGTGCTTACTGAAGC CATAAGACGTAAACCTTATAGTATTGTGCTTTTTGATGAGGTGGAAAAAGCCCATCCTGATGTGTTTAATATCCTTTTGC AAGTGCTTGATGATGGGCGATTGACTGATAGTAAGGGTGTGAGCGTGGATTTTAGCAATACGATTATTATTTTAACAAGC AATATTGCAAGTGATAAAATTATGGAGATTGGGGATAAGCAAGAGCGCCAAAAGGCTGTGAAAGAAGCACTTAAAATGTA TTTTAAACCAGAATTTTTAAATCGCCTTGATGATGTAGTTGTGTTTAATCCGCTCGGACTTGCTGATATTACTCAAATTG TGGATATTATGTTTAAGTCTTTGGCTAAAAGGGCGTTGGAGAAAGGTATTAATGTTACCCTTAGTCAAGAGGCTAGAGAG CATATTGCCCAAGTAGGCTTTGATAGCGTATATGGCGCGCGTCCGCTAAAAAGGGCATTATATGAAGAGGTTGAGGATAG ATTAGCAGATTTGATTTTGCGTGATGAGATTAAAGAGGGTGATAGAGTGAATTTTGCGCTTAAAAATGGCGAAATTTGCA CACATATAGAAAAAGAATAG Protein sequence : MNLFEKLTNQMKETLDSAASLALHSSNQEISLAHIYWALLSNHQSVLNQALNKMNIDKTALELQARSEVDKLPKSSQVQK ENLSISKELSSALNLAQGEAIKNGDSFIAVDMFLIANLKESTFVAIFKPLVDIAEFKKTLLSLRGESKIESQSGDDNLES LSKFGIDLTQKALENTLDPVIGRDDEINAMMQILIRKSKNNPILLGEPGVGKTAVVEGLAQRIVAKAVPTSLQNKKLIAL DMSALIAGAKYRGEFEERLKNVVDEVKKAGNIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRK YFEKDAALTRRFQPINVNEPSINEALQILRGIKPNLEAHHNVNITDAALVAAAKLSSRYITDRFLPDKAIDLIDEAAAEL KMQIESEPLELSKIKKHIANLEVEKQALNMEKTNVNEARVLEIDKELENLREEKMSLEGKFEQEKSVFTRIATIKAELDS LKRESELAKRSGDYNKAAEIDYGKIPDIQAQEAALHKQWEEMQQNGTLLKNAVTQESIAGVVSRWSGIPIKKMLQSQKER ILGIESELAKSVVGQDDAIKAIARAIKRNKAGLNDASRPIGSFLFLGPTGVGKTQCAKTLAEFLFDNAKSLVRIDMSEYM EKHAVSRLVGAPPGYVGYEEGGVLTEAIRRKPYSIVLFDEVEKAHPDVFNILLQVLDDGRLTDSKGVSVDFSNTIIILTS NIASDKIMEIGDKQERQKAVKEALKMYFKPEFLNRLDDVVVFNPLGLADITQIVDIMFKSLAKRALEKGINVTLSQEARE HIAQVGFDSVYGARPLKRALYEEVEDRLADLILRDEIKEGDRVNFALKNGEICTHIEKE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-99 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpA | NP_859640.1 | ATP-dependent Clp protease ClpA | VFG2084 | Protein | 3e-109 | 45 |
| clpA | NP_859640.1 | ATP-dependent Clp protease ClpA | VFG2076 | Protein | 1e-111 | 43 |
