Gene Information

Name : ipgC (CP0129)
Accession : NP_858262.1
Strain :
Genome accession: NC_004851
Putative virulence/resistance : Virulence
Product : IpgC, cytoplasmic chaperone for IpaB and IpaC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 112996 - 113463 bp
Length : 468 bp
Strand : -
Note : -

DNA sequence : 
ATGTCTTTAAATATCACCGAAAATGAAAGCATCTCTACTGCAGTAATTGATGCAATTAACTCTGGCGCTACACTGAAAGA
TATTAATGCAATTCCTGATGATATGATGGATGACATTTATTCATATGCTTATGACTTTTACAACAAAGGAAGAATAGAGG
AAGCTGAAGTTTTCTTCAGGTTTTTATGTATATACGACTTTTACAATGTAGACTACATTATGGGACTCGCAGCTATTTAT
CAGATAAAAGAACAGTTCCAACAAGCAGCAGACCTTTATGCTGTCGCTTTTGCATTAGGAAAAAATGACTATACACCAGT
ATTCCATACTGGACAATGCCAGCTTCGGTTGAAAGCCCCCTTAAAAGCTAAAGAGTGCTTCGAACTCGTAATTCAACACA
GCAATGATGAAAAATTAAAAATAAAAGCACAATCATACTTGGACGCAATTCAGGATATCAAGGAGTAA

Protein sequence : 
MSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIY
QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQDIKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sicA YP_217805.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 1e-43 60
spaT NP_457280.1 unknown function Virulence SPI-1 Protein 1e-43 60
spaT NP_806489.1 hypothetical protein Virulence SPI-1 Protein 1e-43 60
sicA NP_461807.1 secretion chaperone Virulence SPI-1 Protein 1e-43 60
sycB AAS66850.1 SycB Not tested SSR-1 Protein 2e-30 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ipgC NP_858262.1 IpgC, cytoplasmic chaperone for IpaB and IpaC VFG0988 Protein 1e-67 100
ipgC NP_858262.1 IpgC, cytoplasmic chaperone for IpaB and IpaC VFG0547 Protein 4e-44 60
ipgC NP_858262.1 IpgC, cytoplasmic chaperone for IpaB and IpaC VFG2451 Protein 6e-44 51
ipgC NP_858262.1 IpgC, cytoplasmic chaperone for IpaB and IpaC VFG1769 Protein 5e-36 48