Gene Information

Name : CP0112 (CP0112)
Accession : NP_858245.1
Strain :
Genome accession: NC_004851
Putative virulence/resistance : Unknown
Product : ISSfl4 ORF3
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 92107 - 93708 bp
Length : 1602 bp
Strand : -
Note : -

DNA sequence :
ATGAACAATGAACTCCCCGATGATATTGAGCTGCTTAAAGCCATGTTGCGTAAGCAACAGAGTCGGCTTCGACAGTATGC
CTGTCAGGTCGCGGGCTATGAGCAGGAAATTGAACGGCTGAAAGCGCAACTCGACAGGTTGCGTCGTATGTTGTTCGGCC
AGAGTTCAGAGAAAAAGCGTCATAAGCTTGAAAATCAGATCCGACAGGCAGAAAAACGACTGTCGGAACTGGAAAACCGG
CTGAACACAGCCAGAAATCTTCTGGAAGATGCATCGTCAGTCACAGATTCACCTGACACCAGTCCCCCGTCAGAAAACCC
GATCGCCAGTAAGCCTGAATTCCCGGGACGAAAATCTTCACGAAAACCGCTGCCGGCAGAACTTCCCCGGGAGACACATC
GCCTTCTGCCTGCTGAAACCAGTTGCCCGGCCTGTGGAGGTGTTCTGAAAGAAATGGGGGAAACAATCTCAGAGCAACTG
GATATCATTAATACCGCCTTTAAAGTTATCGAAACCATACGTCCCAAACTGGCCTGTAGCCGGTGTGATGTCATCGTTCA
GGCACCACTTCCTCCTAAACCGATCGAACGCGGTTATGCCAGTGCAGGGTTACTTGCACGGATCCTGGTCAGCAAATATA
TGGAACATATCCCTTTATATCGCCAGTCAGAAATATACGCGCGACAGGGCGTGGAGCTGAGCCGTAATACCATGGTGCGC
TGGGTATCAGAAATGGCAGACAAACTCCGTCCTCTGTATATAGCGCTGAATGACTATGTTCTGGAGGCAGGAAAGGTGCA
CGCAGATGACACTCCGGTGAAAGTACTGGCCCCGGGGAACGGAAAGACGAAAACGGGTCGTCTGTGGGTATACGTCAGGG
ATGATCGTAATGCGGGTTCATCCCTGCCGGCAGCCGTCTGGTTCGCGTATTCGGCAGATCGCAAAGGAGAACATCCGCAG
CTCCACCTGGCAAAGTATCAGGGCGTACTGCCCGCTGATGCCTATGCAGGTTATAACGTACTGTACGAAACGGGCCGGGT
GAAGGAAGCCGGGTGCCTGGCCCACGCCCGCCGAAAAATCCATGACGAGGATGTGCGCCGTCCGACAGAAATGACTCAGG
AAGCGCTCAGACGGATAGCAGAGTTATACGACATAGAAGCGGAGATACGTGGCAGTCCGGCAGAGGAACGGCTTGCAGTC
AGAAAAGCCAGAAGCGTCCAGTTGATGCAGTCGTTGTACGACTGGATACAGTTGCAGAGGAAAACGCTGTCGAAACATGC
GGAGATGGCGAAGGCGTTCGACTATATCCTGAATCACTGGAATGCGCTGAACGAGTTCTGTCGTGACGGCCGGGTGGAAA
TAGACAACAACATCGGTGAAAACGCGTTACGATCGGTGGCGGTTGGAAGAAAAAATTATCTCTTTTTCGGCTCAGACAAG
GGAGGAGAAAGTGCGGCGATCATCTACAGTCTGCTGGTCACCTGCAAACAGAACGAAGTGGAGCCGGAGGACTGGTTGCG
CGAAGTGATCGAGAAGCTCAATGACTGGCCGTCGAACCAAGTGCATGAACTGCTGCCCTGGAACTTCTCGTCTGTAAAAT
AA

Protein sequence :
MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENR
LNTARNLLEDASSVTDSPDTSPPSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL
DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR
WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQ
LHLAKYQGVLPADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAV
RKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGRVEIDNNIGENALRSVAVGRKNYLFFGSDK
GGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 1e-148 64
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 4e-149 64
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 6e-127 62
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 3e-148 59
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 3e-133 56
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 4e-116 56
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 6e-133 55
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 8e-133 55
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 3e-133 55
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 3e-133 55
unnamed AAC31494.1 L0015 Not tested LEE Protein 2e-133 55
tnp AEA34686.1 transposase Not tested Not named Protein 1e-134 55
unnamed AAL57570.1 unknown Not tested LEE Protein 4e-133 55
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 2e-132 54
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 2e-133 54
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 2e-132 54
unnamed AAL08460.1 unknown Not tested SRL Protein 2e-96 53
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 9e-118 51
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 9e-118 51
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 8e-121 50
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 5e-75 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CP0112 NP_858245.1 ISSfl4 ORF3 VFG0793 Protein 1e-133 55
CP0112 NP_858245.1 ISSfl4 ORF3 VFG1051 Protein 1e-96 53
CP0112 NP_858245.1 ISSfl4 ORF3 VFG1736 Protein 2e-97 52