Name : smpB (AM1171) Accession : YP_154258.1 Strain : Anaplasma marginale St. Maries Genome accession: NC_004842 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1049982 - 1050431 bp Length : 450 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGAAATAGTTGCGGAAAATCGCAAGGCGAGGTTTGACTATTTCGTCCTACAGGAGTATGACGCTGGGATGGTGCTAGT TGGGAGCGAGGTGAAATCCCTGCGCCAGCGCAAAGTAAACATGGGTGACGCCTACGTCTTGGAAAAAGACATGGAGCTGT GGATACACAATCTACACATCTCCGAGTACAACAGGGCAGACCGCAAAAATCATAAGCCGTTGCGTGTGAGGAAGCTGCTA CTACGCAAGCGTGAGATCCACAAAATTGCTGGCAACATAAAAGTGTCGGGTCTGGCTGTGGTGCCGCTGATGATCTTTTT CAATAACAAGGGGATTGCAAAAATCAAAATTGCAATAGTGAAGGGGAAAAAGCTATACGATAAGCGCGAGGCTATAAAAA CCAGGGACTGGCAGCGCGAGAAGAGTAGAATATCCCGCAGGGAAGTCTAG Protein sequence : MEIVAENRKARFDYFVLQEYDAGMVLVGSEVKSLRQRKVNMGDAYVLEKDMELWIHNLHISEYNRADRKNHKPLRVRKLL LRKREIHKIAGNIKVSGLAVVPLMIFFNNKGIAKIKIAIVKGKKLYDKREAIKTRDWQREKSRISRREV |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 2e-10 | 42 |