|
Name : serS (NE0180) Accession : NP_840274.1 Strain : Nitrosomonas europaea ATCC 19718 Genome accession: NC_004757 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 218882 - 220195 bp Length : 1314 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTAGATATCCAACAATTACGCAGCAATCTGCAAAACATCATTACCCGCCTTGCGCAAAGAGGTTACGACTTTCCCGT AGCGGATTTCGAATCCCTGGAAAGCCAGCGTAAATCTGTCCAAACCCTGACCCAGACATTGCAGGCAAAACGTAATTCAG CCTCCAAACAAATTGGAATTGCCAGGCAACGGGGTGAAGATGTCAGTCTGATCATGGCCGAAGTGGCCAATATGGGCGAT GAACTCAAACAGGCAGAAAATCAGCTCGAAGCCGTTCAGACCCGATTGCAACAGCTATTGCTGGAAATTCCCAATCTGCC ACACGACAGTGTTCCAGCAGGCAAGGATGAAAACGATAATCTGGAAATGCGGCGTTGGGGGACCCCGAAAACGTTTGATT TTCCGGTACAGGATCATGCCAGCATTGGTGAACACCTCAAGCTGATCGACTTTGAAACAGCCGCAAAGCTGAGTGGTGCG CGCTTCAGTCTGCTGAAAGGCGGACTGGCGCGACTTCATCGTGCTCTGGCGCAATTCATGCTCGACACACACACACAGGA AAATGGCTACAACGAAATCTATGTACCTTACCTGGTCAATGCAGACTGTTTGCGGGGTACGGGACAGCTGCCAAAATTTG AACAGGATCTTTTCGCTGTCCGGTCCGGCGCTCAGGAAGAGGCAGACAACCCGGATAAAACGGGTCCGGCAGGTCTGCAT CTCATCCCGACTGCCGAAGTCCCTCTTACCAACATTGTACGAAACACGATCGTTCCACTTGAAAATCTCCCGCTTCAATT TGTCGCGCATACGCCCTGTTTTCGTTCCGAGGCAGGGAGTTACGGCCGAGATACCCGCGGACTGATCCGCCAGCACCAGT TTGATAAGGTCGAGCTCGTACAAATCACTCATCCGGAAAAATCCCATGAAGCGTTGGAATCACTGGTAGGCCATGCCGAA AAGATTCTCCAGAAGCTGGAGCTGCCTTACCGTGTCATGCTGCTGTGTACCGGTGACATGGGATTCTCTGCTGCCAAGAC TTACGATATCGAAGTATGGCTGCCTGCGCAGCAAGCCTACCGGGAAATCTCGTCATGCAGTAATTGTGAAGCATTCCAGG CGCGGCGCATGCAGGCACGCTTCCGCAAGGGGCAGGAGAAACCTGAGCTGCTGCATACACTCAATGGCTCCGGGCTGGCA GTCGGGCGGACACTGGTGGCCATTCTGGAAAATTATCAGAATGAAGATGGCAGTATCACCATTCCGGAGATTTTGCGGGC TTATATGGGTGGCATTGAACGGATCGGCCTATAA Protein sequence : MLDIQQLRSNLQNIITRLAQRGYDFPVADFESLESQRKSVQTLTQTLQAKRNSASKQIGIARQRGEDVSLIMAEVANMGD ELKQAENQLEAVQTRLQQLLLEIPNLPHDSVPAGKDENDNLEMRRWGTPKTFDFPVQDHASIGEHLKLIDFETAAKLSGA RFSLLKGGLARLHRALAQFMLDTHTQENGYNEIYVPYLVNADCLRGTGQLPKFEQDLFAVRSGAQEEADNPDKTGPAGLH LIPTAEVPLTNIVRNTIVPLENLPLQFVAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQITHPEKSHEALESLVGHAE KILQKLELPYRVMLLCTGDMGFSAAKTYDIEVWLPAQQAYREISSCSNCEAFQARRMQARFRKGQEKPELLHTLNGSGLA VGRTLVAILENYQNEDGSITIPEILRAYMGGIERIGL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-98 | 50 |
