Gene Information

Name : radC (NE1464)
Accession : NP_841505.1
Strain : Nitrosomonas europaea ATCC 19718
Genome accession: NC_004757
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 1598891 - 1599565 bp
Length : 675 bp
Strand : +
Note : Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase

DNA sequence :
ATGGCAATTTCTGACTGGCCGGAGGCTGAGCGCCCGCGGGAGAAACTGATCGAGAAAGGTGCCGCCGCCCTTTCAGATGC
GGAATTACTGGCTATTTTTCTGCGTACTGGCATTACCGGGGTCAGCGCTGTCGAGCTGGCTCGCAAGCTGCTGACTCATT
TCGGCAGTCTGACAAAATTATGTGCTGCAAGCCTGCACGAATTCAGCGAGCTGCCTGGAATGGGACCGGCAAAATTTGCA
CAACTGCAAGCAGTCATGGAAATGGCAAAACGCGCATTAGCGGAAGAGCTCAAGAATGGTGACATCATGGATTCTCCGCA
ATCCGTACGCAACTATCTTTGTCTGAGCCTGAAAGGAAAACCATACGAAGTTTTTGTCGGTATTTTTCTGGATGCCAGAC
ATCGAACGATCGTTACCGAAGAATTATTCAACGGTACATTGACACAAGCCAGTGTTTATCCGCGTGAAGTTGTCAAACGT
GCCCTCTATCACAACGCAGCAGCTATGATTTTTGCACACAATCATCCTTCTGGAATCGCTGAACCCAGTACAGCAGATGA
GATATTGACCCAATCCCTCAAACAGGCACTGGCACTGGTGGATGTGAAGGTACTCGATCATTTTGTCATCGGCAGCAGTG
AAGTCGTGTCATTTGCGGAACGTGGCCTAATTTAA

Protein sequence :
MAISDWPEAERPREKLIEKGAAALSDAELLAIFLRTGITGVSAVELARKLLTHFGSLTKLCAASLHEFSELPGMGPAKFA
QLQAVMEMAKRALAEELKNGDIMDSPQSVRNYLCLSLKGKPYEVFVGIFLDARHRTIVTEELFNGTLTQASVYPREVVKR
ALYHNAAAMIFAHNHPSGIAEPSTADEILTQSLKQALALVDVKVLDHFVIGSSEVVSFAERGLI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 4e-26 44
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 2e-26 44
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 2e-26 44
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 4e-26 43
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 1e-26 43
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 1e-26 43
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 8e-27 43
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 2e-25 43
unnamed AAL08475.1 unknown Not tested SRL Protein 3e-26 43
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 1e-25 42
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 6e-26 42
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 6e-26 42
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 3e-26 42
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 6e-26 42
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 3e-26 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
radC NP_841505.1 DNA repair protein RadC VFG1617 Protein 2e-26 44
radC NP_841505.1 DNA repair protein RadC VFG1066 Protein 1e-26 43
radC NP_841505.1 DNA repair protein RadC VFG1528 Protein 7e-26 42
radC NP_841505.1 DNA repair protein RadC VFG0660 Protein 2e-26 42