Gene Information

Name : NE1409 (NE1409)
Accession : NP_841450.1
Strain : Nitrosomonas europaea ATCC 19718
Genome accession: NC_004757
Putative virulence/resistance : Virulence
Product : response regulator PhoP
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1538550 - 1539239 bp
Length : 690 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCATCCTGGTCATCGAAGATGAATTTCGTCTGCAAAATCAGATCCGCCGGCAGTTGGAGGCAGCGGGTTATATGGT
CGATACCAGCAGCAGTGGCGATGAAGGGTTGTTTCTCGCCACGGAATACCGGCCCGATGCTGCCATCATCGATATTGGCC
TGCCCGGTAAATCCGGCCTGGAAATCATCAAGGCACTGCGGGAACGCGGCAGCCTGCTGCCTATCCTGATTCTGACTGCG
CGCAGCAGCTGGCAGGACAAGGTGCAGGGACTGGAAATGGGCGCGGATGATTACCTGACCAAGCCGTTTCAGATGGAAGA
GCTGCAGGCCAGAGTCCGGGCATTATTGCGCCGTGCTGTCGGTATACCGCAAACCTTGCTGAAGTGTGGCCCCATCGCGG
TGGATGTCACAGCACAATCGGTCAGTGTCGATGGTGCGAACATCGAACTGACATCGTTTGAATATCGCCTGCTGGAAGAA
CTGGTGTGCCACCGTGGCGAGATACTTTCCAAGGAGTCACTTGCTGATGCCCTGTATCCGCACAATGAGGATCGTGACAG
CAACGTGCTCGAAGTCATGATCGGTAGGTTGCGGCGCAAACTCGACCCGGAGGGTACATTGAAGCCGATCGAAACCATGC
GCGGGCGCGGCTATCGTTTTACGCTGGAATGTAACAGCAAATCGCCATGA

Protein sequence : 
MRILVIEDEFRLQNQIRRQLEAAGYMVDTSSSGDEGLFLATEYRPDAAIIDIGLPGKSGLEIIKALRERGSLLPILILTA
RSSWQDKVQGLEMGADDYLTKPFQMEELQARVRALLRRAVGIPQTLLKCGPIAVDVTAQSVSVDGANIELTSFEYRLLEE
LVCHRGEILSKESLADALYPHNEDRDSNVLEVMIGRLRRKLDPEGTLKPIETMRGRGYRFTLECNSKSP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-23 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-23 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NE1409 NP_841450.1 response regulator PhoP NC_002516.2.879194.p Protein 3e-52 50
NE1409 NP_841450.1 response regulator PhoP CP000647.1.gene1136. Protein 3e-42 45
NE1409 NP_841450.1 response regulator PhoP BAC0530 Protein 3e-42 45
NE1409 NP_841450.1 response regulator PhoP CP000034.1.gene2022. Protein 1e-41 44
NE1409 NP_841450.1 response regulator PhoP NC_002695.1.913289.p Protein 3e-40 44
NE1409 NP_841450.1 response regulator PhoP BAC0083 Protein 7e-25 44
NE1409 NP_841450.1 response regulator PhoP BAC0638 Protein 4e-20 44
NE1409 NP_841450.1 response regulator PhoP CP004022.1.gene1005. Protein 4e-41 43
NE1409 NP_841450.1 response regulator PhoP CP001918.1.gene2526. Protein 2e-41 43
NE1409 NP_841450.1 response regulator PhoP CP001138.1.gene1939. Protein 2e-42 43
NE1409 NP_841450.1 response regulator PhoP BAC0308 Protein 8e-24 43
NE1409 NP_841450.1 response regulator PhoP NC_007622.3794948.p0 Protein 2e-22 42
NE1409 NP_841450.1 response regulator PhoP NC_003923.1003417.p0 Protein 2e-22 42
NE1409 NP_841450.1 response regulator PhoP NC_013450.8614146.p0 Protein 2e-22 42
NE1409 NP_841450.1 response regulator PhoP NC_002951.3238224.p0 Protein 2e-22 42
NE1409 NP_841450.1 response regulator PhoP NC_007793.3914065.p0 Protein 2e-22 42
NE1409 NP_841450.1 response regulator PhoP NC_002758.1121390.p0 Protein 2e-22 42
NE1409 NP_841450.1 response regulator PhoP NC_010079.5776364.p0 Protein 2e-22 42
NE1409 NP_841450.1 response regulator PhoP NC_002952.2859858.p0 Protein 2e-22 42
NE1409 NP_841450.1 response regulator PhoP BAC0347 Protein 1e-25 41
NE1409 NP_841450.1 response regulator PhoP BAC0125 Protein 2e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NE1409 NP_841450.1 response regulator PhoP VFG0475 Protein 2e-42 43
NE1409 NP_841450.1 response regulator PhoP VFG0596 Protein 6e-24 42
NE1409 NP_841450.1 response regulator PhoP VFG1389 Protein 1e-27 41