Gene Information

Name : S0949 (S0949)
Accession : NP_836599.1
Strain : Shigella flexneri 2457T
Genome accession: NC_004741
Putative virulence/resistance : Unknown
Product : IS629 orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 929611 - 930498 bp
Length : 888 bp
Strand : +
Note : residues 1 to 295 of 295 are 98.64 pct identical to residues 2 to 296 of 296 from GenPept : >gb|AAL67398.1|AF447814_66 (AF447814) transposase [Escherichia coli]

DNA sequence : 
ATGCCACTGCTGGATAAGCTGCGTGAGCAGTACAGGGTCGGACCGCTATGCAGCGAACTGCATATTGCCCCGTCAACGTA
TTACCACTGTCAGCAACAGCGACATCATCCGGATAAACGCAGTGCCCGTGCGCAGCGCGATGACTGGCTGAAGAAAGAGA
TACAGCGCGTATACGATGAAAATCACAAGGTATACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGTATCAGA
GTGGCCAGATGCACTGTGGCACGTCTCATGGAGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGAC
CATCAGCCGGAAAGCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGG
CTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGATACATCGTG
GGGTGGCGGGTCTCATCGTCCATGGAAACGACATTCGTGCTGGATGCACTGGAGCAGGCGTTATGGGCCCGTCGACCGTC
CGGCACGGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGATTAC
TGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTA
ATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCACACTCACGTGGGTGGACTGGTATAACAATCGACG
ATTGCTGGAAAGGCTGGGCCACATCCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGGAAACGATGATCTGG
CAGCCTGA

Protein sequence : 
MPLLDKLREQYRVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIR
VARCTVARLMEVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIV
GWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEV
IHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 3e-93 99
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 3e-134 99
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-100 99
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 7e-93 98
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-133 98
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 6e-108 98
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 1e-130 97
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-130 97
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-130 97
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-130 97
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-133 97
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-132 97
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-132 97
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 3e-130 96
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-130 96
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-128 96
Z1638 NP_287141.1 transposase Not tested TAI Protein 7e-130 95
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 9e-132 95
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 7e-132 95
Z1198 NP_286733.1 transposase Not tested TAI Protein 7e-130 95
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-127 93
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-51 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S0949 NP_836599.1 IS629 orfB VFG1602 Protein 6e-128 93