Gene Information

Name : S0943 (S0943)
Accession : NP_836593.1
Strain : Shigella flexneri 2457T
Genome accession: NC_004741
Putative virulence/resistance : Unknown
Product : IS600 orfA
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 926848 - 927150 bp
Length : 303 bp
Strand : -
Note : residues 1 to 100 of 100 are 99.00 pct identical to residues 1 to 100 of 100 from GenPept : >gb|AAL72452.1| (AF386526) hypothetical protein [Shigella flexneri 2a]

DNA sequence :
ATGAGCAGAAAAACCCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGAT
CAGTGAAGGCGCTTCCCGATTATCTCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTA
CTCCTGGTTTCCGCACGGTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAG
CGAGATATATTAAAAAAAGCAACAGCGTATTTTGCACAGGAGTCGCTGAAAAATACGCGTTAA

Protein sequence :
MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGFRTVAELESEILQLRKALNEARLE
RDILKKATAYFAQESLKNTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 3e-39 99
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 3e-39 99
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 8e-39 98
unnamed AAF09021.1 unknown Not tested SHI-O Protein 1e-38 98
unnamed AAF09029.1 unknown Not tested SHI-O Protein 1e-38 98
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 6e-39 98
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 6e-33 97
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 6e-33 97
EXB21 ABD94708.1 putative transposase Not tested ExoU island B Protein 8e-08 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S0943 NP_836593.1 IS600 orfA VFG1707 Protein 2e-39 98