Gene Information

Name : S0715 (S0715)
Accession : NP_836388.1
Strain : Shigella flexneri 2457T
Genome accession: NC_004741
Putative virulence/resistance : Unknown
Product : IS600 orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 710430 - 711116 bp
Length : 687 bp
Strand : -
Note : residues 1 to 228 of 228 are 87.34 pct identical to residues 36 to 272 of 272 from GenPept : >gb|AAL72453.1| (AF386526) hypothetical protein [Shigella flexneri 2a]

DNA sequence :
GTGGCACATATCCGCACTCGCGAAACATATGGAACCCGGCGGCTCCAGACGGAGCTGGCAGAGAATGGCATCATCGTTGG
TCGTGACCGACTGGCACGTCTTCGTAAGGAGCTGAGGCTACGCTGTAAGCAGAAACGCAAGTTCAGAGCGACTACGAACC
CGAACCACAATCTGCCAGTTGCGCCAAATCTGCTGAACCAGACGTTCGCTCCTACAGCACCAAATCAGGTCTGGGTGGCG
GACCTGACGTATGTTGCTGGCATCAAAGATGTTTATACGTGCGAAATTGTCGGCTACGCCATGGGAGAGCGCATGACAAA
AGAGCTGACAGGTAAAGCCCTGTTTATGGCGCTCAGGAGCCAGCGCCCACCTGCCGGGCTAATCCACCACTCTGATCGAG
GTTCACAGTACTGCGCATACGATTACCGGGTCATACAGGAGCAGTCTGGTCTGAAAACATCAATGTCGCGTAAAGGTAAC
TGTTACGACAACGCTCCGATGGAAAGCTTCTGGGGAACGCTGAAAAATGAGAGCCTGAGCCACTATCGTTTTAATAACCG
GGATGAAGCCATCTCAGTAATACGGGAATACATTGAGATTTTCTACAATCGTCAGCGTCGTCACTCTCGTCTGGGGAATA
TCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGGCTGCTTAA

Protein sequence :
MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVA
DLTYVAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGN
CYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF09030.1 unknown Not tested SHI-O Protein 5e-89 96
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 5e-89 96
unnamed AAF09022.1 unknown Not tested SHI-O Protein 4e-89 96
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 6e-89 95
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 3e-88 95
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 3e-88 95
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 2e-88 95
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 2e-89 95
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 2e-88 95
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 6e-35 43
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 6e-35 43
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 6e-35 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S0715 NP_836388.1 IS600 orfB VFG1706 Protein 1e-88 95