Gene Information

Name : S4248 (S4248)
Accession : NP_839398.1
Strain : Shigella flexneri 2457T
Genome accession: NC_004741
Putative virulence/resistance : Unknown
Product : IS600 orfA
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 4163019 - 4163318 bp
Length : 300 bp
Strand : -
Note : residues 1 to 98 of 99 are 100.00 pct identical to residues 1 to 98 of 100 from GenPept : >gb|AAL72452.1| (AF386526) hypothetical protein [Shigella flexneri 2a]

DNA sequence : 
ATGAGCAGAAAAACCCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGAT
CAGTGAAGGCGCTTCCCGATTATCCCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTA
CTCCTGGTTCCCGCACGGTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAG
CGAGATATATTAAAAAAAGCAACAGCGTATTTTGCACAGGAGTCGCTGAAAAATAGGTAA

Protein sequence : 
MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLE
RDILKKATAYFAQESLKNR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 5e-39 100
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 5e-39 100
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-38 99
unnamed AAF09021.1 unknown Not tested SHI-O Protein 1e-38 99
unnamed AAF09029.1 unknown Not tested SHI-O Protein 1e-38 99
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 8e-39 99
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 1e-33 98
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 1e-33 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S4248 NP_839398.1 IS600 orfA VFG1707 Protein 3e-39 99