Gene Information

Name : shiB (S4833)
Accession : NP_839236.1
Strain : Shigella flexneri 2457T
Genome accession: NC_004741
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3964845 - 3965306 bp
Length : 462 bp
Strand : -
Note : residues 1 to 153 of 153 are 99.34 pct identical to residues 1 to 153 of 153 from NRprotein_Feb03 : >pir||T44465 hypothetical protein shiB [imported] - Shigella flexneri gb|AAD44732.1|AF141323_3 ShiB [Shigella flexneri]

DNA sequence : 
ATGGATGAAAATGCTTTAAGGTTTGCCTCATACTGGCGCAACTCGCTTGCAGATGCTGAGTCAGGAAAGGGCTGTTTTGA
ACGGAAAGACGCCCAAAATTTCACTCACTGGCATGGGATAGCGGCGGGACGTCTTGACGAAGCGATTGTCAATAAATTTT
TTAAGGGAGAAAAAGACGATGTCGAAACTGTCAATGTCATCTTACGCCCAAAAGTTTATTTCCGGTTACTGCAGCATGGT
AAGGACCGTTCCGCAGGCACGCCTGATATTGTTACACCGATAGTGACGCCAGCCTTGCTAAGCCGTGAGGGTTTTTTATA
TCCGACGCCAGCGACCTCCATTCCCAGAGACCTGCTTGAACCTTTGCCAAAAGGAGCATTTTCGATTGGTGAGATTGGGC
AGTATGACAAATACAAGACGACCCATACTGATCCTACCCACGTAATGTGGACACGGCCCTAA

Protein sequence : 
MDENALRFASYWRNSLADAESGKGCFERKDAQNFTHWHGIAAGRLDEAIVNKFFKGEKDDVETVNVILRPKVYFRLLQHG
KDRSAGTPDIVTPIVTPALLSREGFLYPTPATSIPRDLLEPLPKGAFSIGEIGQYDKYKTTHTDPTHVMWTRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
shiB NP_839236.1 hypothetical protein Virulence SHI-2 Protein 2e-69 100
shiB NP_709439.1 hypothetical protein Virulence SHI-2 Protein 2e-69 100
shiB AAD44732.1 ShiB Virulence SHI-2 Protein 4e-69 99
shiB AAK71629.1 ShiB Not tested SHI-3 Protein 2e-61 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
shiB NP_839236.1 hypothetical protein VFG0600 Protein 6e-70 100
shiB NP_839236.1 hypothetical protein VFG1077 Protein 6e-62 96