|
Name : lpfC (S4048) Accession : NP_839216.1 Strain : Shigella flexneri 2457T Genome accession: NC_004741 Putative virulence/resistance : Unknown Product : long polar fimbriae Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3940913 - 3943435 bp Length : 2523 bp Strand : - Note : residues 1 to 840 of 840 are 99.40 pct identical to residues 1 to 840 of 840 from GenPept : >gb|AAL18163.1| (AY057066) LpfC [Escherichia coli] DNA sequence : ATGATGACGACCAGAATAGTGGTTGGCCTCACGGCAGGGACGTGTCTGATTTTCTCGCAAAACCTGATGGCCGAGGTCAG TGTATTCAATCCGGCGCTTCTGGAAATCAACCATCAATCCGGAGTCGATATTCGCCAGTTTAATCGGGCAAACCTGATGC CCCCAGGTGTTTATAGCGTTGATATTTTTATCAACGGTAAAATGTTTGAACGTCAGGATGTGACATTTGTTCAGGATAAT CCAGATGCTGATCTGCACGCTTGCTTTATTGCCATTAAAAAAACACTGTCCTCCTTTGGCATAAAAGTTGATGCGCTCAA ATCGTTCAATGATGTGGATGAGACGGTTTGCCTCGATCCTGCTCCACGTATTGAAGGCTCATCCTGGCAGTTTGACAGTG ATAAATTGCAGCTGAATATATCCATTCACCAAATCTACATGGACGCGATGGCTTATGATTACATCAGCCCCACGCGTTGG GATGAGGGGATTAATGCGCTCACCATCAACTACGATTTTTCTGGTTCACATACACTACGTTCAGATTATGGTTCACAAGA GACAGATACCAGTTATCTCAATCTGCGCAATGGACTGAATATTGGACCGTGGCGGCTACGTAATTACAGTACTTTAAACA CCAGCGATGGCCGTGCGGAATACAACTCCATTAGTACCTGGATACAGCGCGATATTGCCGCGTTAAGAAGCCAGATTATG ATTGGTGATACGTGGACGGCGAGCGATATTTTCGACAGTACGCAAATTCGCGGCGCGCGTTTGTATACTGATAACGATAT GCTACCCGCCAGCCAGAATGGCTTTGCTCCTGTGGTTCGTGGGATTGCAAAGTCCAACGCCACCGTCATCATTCGGCAGA ATGGCTACGTGATTTATCAGTCAGCCGTTCCACAAGGTGCTTTTGAGATCACCGATCTCAACACCGCAAGTACAGGTGGC GATTTGGACGTAACCATCAAAGAAGAAGACGGTAGCGAACAACGATTCACCCAACCTTATGCTTCATTGGCGATTCTTAA ACGTGAAGGTCTGACAGATGTTGATGTCAGCGTGGGTGAATTGCGCGATGAAGACGGATTTACACCGGACGTCCTTCAGG CGCAAATACTTCATGGTTTTTCCCACGGGATCACTTTATATGGAGGTATGCAGGCTGCTGAAAATTATGGTTCTGCAGCT CTGGGTGTCGGTAAAGATCTTGGCGCTTTGGGCGCAATTTCTTTCGATGTGACACATGCTCGTGCGAATTTTAGCCATGA TGATACAGAAACGGGTCAGTCATATCGCTTTCTCTATTCAAAACTATTTGACGACACAGACACTAGCTTGCGCCTGGTTG GCTATCGTTACTCCACCGAGGGCTACTATACCCTCAATGAGTGGGCATCGCGGCGCAACAGCCCTGAAGACTTTTGGGAA ACAGGTAACCGACGTAGTCGCGTGGAGGGAACGCTAACGCAGTCGTTGGGGAGAGATTATGGCAATTTATACCTGACATT AAGCCGGCAACAATACTGGCATACCGATGATGTCGAACGATTAATGCAATTTGGCTACAGCAGTAGCTGGAAGCGTCTCT CGTGGAACGTCTCCTGGAGTTATTCCAATACTGCCAGACAGGGGACGGGGAACAACCATGCCAGTGATAACACCAGTGAG CAGATCTACATGCTCTCTTTATCTGTTCCTTTATCGGGCTGGTGGGGTAATAGTTACGCCACCTATTCTGTTTCGCAAAA CGATAATTCCGGTAGCTCACATCAACTCGGACTCAGCGGTACGGCGCTGGAAAGAAATAACCTTTCATGGAATTTAATGC AGTCCTATAACAGTCATGATGATGAGGTTGGCGGTAATATGTCCCTGACCTATGATGGCTCTTATGGCACGGTGAACGGC AGCTATAACTACAGCCAAAATTCCCAGAGGCTGAATTATGGTATCAGAGGGGGAATTCTGGCACACAGCGAAGGGGTAAC GTTAAGTCAGGAGTTAGGTGAAACTATTGCTCTTGTTAAAGCACCTGGGGCCGCCGGGTTAGAAATAGATAATATGCGCG GTGCTGCGACGGACTGGCGCGGCTATACGGTCAAGACACAGCTAAACCCTTATGATGAAAATCGGGTAGCAATCAGCGAT AACTATTTCTCGAAGTCGAATATAGAACTTGATAATACCGTCGTTACGATGGTTCCCACGCGTGGTGCAGTGGTTAAAGC GGAGTTTGTGACTCATGTGGGTTATCGCGTTCTCTTCAGAGTGTTAAATGCAAATGGTAAACCGGTACCTTTTGGAGCCA TTGCTGCGATACAAGATGCAAGTTTGGCAGATTCAGGAATTGTCGGTGACCGTGGCGAACTTTATCTTTCTGGTCTACCA GAAAAAGGACAGGTTACGTTATCCTGGGGAGAAAACGCCTCAACAAAATGCATCTTCAATTATTCATTTTCGACACCAGA AAGTGAGAGCGGATTAATTGAACAGGGTGTGACATGTCATTAA Protein sequence : MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDN PDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRW DEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGG DLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAA LGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSE QIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNG SYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLP EKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 100 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 100 |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 0.0 | 95 |
