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Name : S0379 (S0379) Accession : NP_836101.1 Strain : Shigella flexneri 2457T Genome accession: NC_004741 Putative virulence/resistance : Unknown Product : ISSfl3 orfD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3436 EC number : - Position : 383978 - 385027 bp Length : 1050 bp Strand : - Note : residues 1 to 349 of 349 are 99.71 pct identical to residues 2 to 350 of 350 from GenPept : >gb|AAK18526.1|AF348706_215 (AF348706) IS orf [Shigella flexneri] DNA sequence : ATGTCATCGGCACCACTTCCTCCTAAACCGATCGAACGCGGTTATGCCAGTGCAGGGTTACTTGCACGGATCCTGGTCAG CAAATATATGGAACATATCCCTTTATATCGCCAGTCAGAAATATACGCGCGACAGGGCGTGGAGCTGAGCCGTAATACCA TGGTGCGCTGGGTATCAGAAATGGCAGACAAACTCCGTCCTCTGTATATAGCGCTGAATGACTATGTTCTGGAGGCAGGA AAGGTGCACGCAGATGACACTCCGGTGAAAGTACTGGCCCCGGGGAACGGAAAGACGAAAACGGGTCGTCTGTGGGTATA CGTCAGGGATGATCGTAATGCGGGTTCATCCCTGCCGGCAGCCGTCTGGTTCGCGTATTCGGCAGATCGCAAAGGAGAAC ATCCGCAGCTCCACCTGGCAAAGTATCAGGGCGTACTGCAGGCTGATGCCTATGCAGGTTATAACGTACTGTACGAAACG GGCCGGGTGAAGGAAGCCGGGTGTCTGGCCCACGCCCGCCGAAAAATCCATGACGAGGATGTGCGCCGTCCGACAGAAAT GACTCAGGAAGCGCTCAGACGGATAGCAGAGTTATACGACATAGAAGCGGAGATACGTGGCAGTCCGGCAGAGGAACGGC TTGCAGTCAGAAAAGCCAGAAGCGTCCAGTTGATGCAGTCGTTGTACGACTGGATACAGTTGCAGAGGAAAACGCTGTCG AAACATGCGGAGATGGCGAAGGCGTTCGACTATATCCTGAATCACTGGAATGCGCTGAACGAGTTCTGTCGTGACGGCCG GGTGGAAATAGACAACAACATCGGTGAAAACGCGTTACGATCGGTGGCGGTTGGAAGAAAAAATTATCTCTTTTTCGGCT CAGACAAGGGAGGAGAAAGTGCGGCGATCATCTACAGTCTGCTGGTCACCTGCAAACAGAACGAAGTGGAGCCGGAGGAC TGGTTGCGCGAAGTGATCGAGAAGCTCAATGACTGGCCGTCGAACCAAGTGCATGAACTGCTGCCCTGGAACTTCTCGTC TGTAAAATAA Protein sequence : MSSAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAG KVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYET GRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLS KHAEMAKAFDYILNHWNALNEFCRDGRVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPED WLREVIEKLNDWPSNQVHELLPWNFSSVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| s0025 | CAD33772.1 | IS66-like transposase | Not tested | PAI I 536 | Protein | 3e-92 | 68 |
| unnamed | AAK00463.1 | unknown | Not tested | SHI-1 | Protein | 2e-97 | 66 |
| SF2972 | NP_708746.1 | hypothetical protein | Not tested | SHI-1 | Protein | 8e-95 | 66 |
| c3563 | NP_755438.1 | hypothetical protein | Not tested | PAI I CFT073 | Protein | 3e-104 | 65 |
| st57 | CAC81895.1 | ST57 protein | Not tested | LEE II | Protein | 2e-104 | 63 |
| Z4340 | NP_289564.1 | hypothetical protein | Not tested | OI-122 | Protein | 3e-96 | 57 |
| RS12 | AAP82957.1 | transposase | Not tested | PAPI-2 | Protein | 3e-55 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| S0379 | NP_836101.1 | ISSfl3 orfD | VFG1513 | Protein | 2e-92 | 68 |
| S0379 | NP_836101.1 | ISSfl3 orfD | VFG0634 | Protein | 3e-95 | 66 |
| S0379 | NP_836101.1 | ISSfl3 orfD | VFG1700 | Protein | 1e-104 | 65 |
