Gene Information

Name : S2793 (S2793)
Accession : NP_838131.1
Strain : Shigella flexneri 2457T
Genome accession: NC_004741
Putative virulence/resistance : Unknown
Product : IS600 orfA
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 2687812 - 2688114 bp
Length : 303 bp
Strand : +
Note : residues 1 to 100 of 100 are 100.00 pct identical to residues 1 to 100 of 100 from GenPept : >gb|AAF09029.1| (AF139596) unknown [Shigella flexneri]

DNA sequence : 
ATGAGCAGAAAAACCCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGAT
CAGTGAAGGCGCTTCCCGATTATCTCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTA
CTCCTGGTTCCCGCACGCTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAG
CGAGATATATTAAAAAAAGCAACAGCGTATTTTGCACAGGAGTCACTGAAAAATACGCGTTAA

Protein sequence : 
MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLE
RDILKKATAYFAQESLKNTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF09021.1 unknown Not tested SHI-O Protein 9e-40 100
unnamed AAF09029.1 unknown Not tested SHI-O Protein 9e-40 100
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 2e-39 99
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 2e-39 99
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 3e-39 98
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 4e-39 98
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 2e-33 97
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 2e-33 97
EXB21 ABD94708.1 putative transposase Not tested ExoU island B Protein 4e-09 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S2793 NP_838131.1 IS600 orfA VFG1707 Protein 1e-39 98