Gene Information

Name : S0250 (S0250)
Accession : NP_835973.1
Strain : Shigella flexneri 2457T
Genome accession: NC_004741
Putative virulence/resistance : Unknown
Product : IS629 orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 255387 - 256034 bp
Length : 648 bp
Strand : +
Note : residues 1 to 215 of 215 are 98.13 pct identical to residues 8 to 222 of 222 from GenPept : >gb|AAL72361.1| (AF386526) transposase [Shigella flexneri 2a]

DNA sequence :
GTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGAC
CATCAGCCGGAAAGCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGG
CTGATTTTACTTACGTCAGCACATGGCGGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGATACATCGTG
GGGTGGCGGGTCTCATCGTCCATGGAAACGACATTCGTGCTGGATGCACTGGAGCAGGCGTTATGGGCCCGTCGACCGTC
CGGCACGGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGATTAC
TGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGGAGAGCATCAATGGTCTTTACAAAGCGAAGGTA
ATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCACACTAACGTGGGTGGACTGGTATAACAATCGACG
ATTGCCGGAAAGGCTGGGCCACATCCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGGAAACGATGATCTGG
CAGCCTGA

Protein sequence :
MARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIV
GWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAKV
IHRKSWKNRAEVELATLTWVDWYNNRRLPERLGHIPPAEAEKAYYASIGNDDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 4e-94 99
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 8e-90 99
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 5e-93 99
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 9e-93 99
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 7e-93 99
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 7e-93 97
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 9e-92 97
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 9e-92 97
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-89 96
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-89 96
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-89 96
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 1e-89 96
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-91 96
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 9e-90 95
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 7e-88 95
Z1221 NP_286756.1 transposase Not tested TAI Protein 8e-90 95
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 8e-91 94
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-89 94
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-89 94
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 5e-91 94
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-88 93
c3594 NP_755469.1 transposase Not tested PAI I CFT073 Protein 9e-70 92
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-39 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S0250 NP_835973.1 IS629 orfB VFG1602 Protein 8e-89 93
S0250 NP_835973.1 IS629 orfB VFG1715 Protein 3e-70 92