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Name : S1989 (S1989) Accession : NP_837481.1 Strain : Shigella flexneri 2457T Genome accession: NC_004741 Putative virulence/resistance : Unknown Product : IS600 orfB Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 1916531 - 1917244 bp Length : 714 bp Strand : + Note : residues 1 to 237 of 237 are 91.13 pct identical to residues 36 to 272 of 272 from GenPept : >gb|AAK18576.1|AF348706_265 (AF348706) IS600 orfB [Shigella flexneri] DNA sequence : GTGGCACATATCCGCACTCGCGAAACATATGGAACCCGGCGGCTCCAGACGGAGCTGGCAGAGAATGGCATCATCGTTGG TCGTGACCGACTGGCACGTCTTCGTAAGGAGCTGAGGCTACGCTGTAAGCAGAAACGCAAGTTCAGAGCGACTACGAACC CGAACCACAATCTGCCAGTTGCGCCAAATCTGCTGAACCAGACGTTCGCTCCTACAGCACCAAATCAGGTCTGGGTGGCG GACCTGACGTATGTTGCCACACAGGAGGGATGGTTGTACCTCGCTGGCATCAAAGATGTTTATACGTGTGAAATTGTCGG CTACGCCATGGGAGAGCGCATGACAAAAGAGCTGACAGGTAAAGCCCTGTTTATGGCGCTCAGGAGCCAGCGCCCACCTG CCGGGCTAATCCACCACTCTGATCGAGGTTCACAGTACTGCGCATACGATTACCGGGTCATACAGGAGCAGTTTGGTCTG AAAACATCAATGTCGCGTAAAGGTAACTGTTACGACAACGCTCCGATGGAAAGCTTCTGGGGAACGCTGAAAAATGAGAG CCTGAGCCACTATCGTTTTAATAACCGGGATGAAGCCATCTCAGTAATACGGGAATACATTGAGATTTTCTACAATCGTC AGCGTCGTCACTCTCGTCTGGGGAATATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGGCTGCTTAA Protein sequence : MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVA DLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGL KTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAQ07468.1 | TnpI-like protein | Not tested | Not named | Protein | 9e-96 | 99 |
| hp1 | AAC61713.1 | Hp1 | Not tested | PAI I CFT073 | Protein | 1e-96 | 99 |
| unnamed | AAB86997.1 | hypothetical 31 KD protein | Not tested | SHI-1 | Protein | 4e-97 | 99 |
| unnamed | AAF09030.1 | unknown | Not tested | SHI-O | Protein | 4e-97 | 99 |
| tnpI | AAD44751.1 | TnpI | Not tested | SHI-2 | Protein | 4e-97 | 99 |
| unnamed | AAF09022.1 | unknown | Not tested | SHI-O | Protein | 3e-97 | 99 |
| Z1134 | NP_286669.1 | hypothetical protein | Not tested | TAI | Protein | 3e-96 | 99 |
| Z1573 | NP_287077.1 | hypothetical protein | Not tested | TAI | Protein | 3e-96 | 99 |
| c3575 | NP_755450.1 | transposase insF | Not tested | PAI I CFT073 | Protein | 2e-96 | 99 |
| tnpA1133 | ACK44540.1 | TnpA | Not tested | SGI1 | Protein | 2e-40 | 45 |
| orfB | AGK07032.1 | IS1133 transposase; OrfB | Not tested | SGI1 | Protein | 2e-40 | 45 |
| orfB | AGK07090.1 | IS1133 transposase; OrfB | Not tested | SGI1 | Protein | 2e-40 | 45 |
| insF | CAC43414.1 | transposase of insertion element IS3 | Not tested | PAI III 536 | Protein | 4e-37 | 44 |
| unnamed | AAL57581.1 | transposase 1 | Not tested | LEE | Protein | 6e-38 | 43 |
| ECO111_3732 | YP_003236068.1 | putative IS3 transposase InsF | Not tested | LEE | Protein | 9e-38 | 43 |
| unnamed | AAL57519.1 | transposase 1 | Not tested | LEE | Protein | 1e-37 | 43 |
| l7094 | CAD33743.1 | ORF B protein | Not tested | PAI I 536 | Protein | 3e-23 | 41 |
| orfB | CAE85178.1 | OrfB protein, IS911 | Not tested | PAI V 536 | Protein | 3e-23 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| S1989 | NP_837481.1 | IS600 orfB | VFG1706 | Protein | 7e-97 | 99 |
| S1989 | NP_837481.1 | IS600 orfB | VFG1631 | Protein | 2e-37 | 44 |
| S1989 | NP_837481.1 | IS600 orfB | VFG1484 | Protein | 2e-23 | 41 |
