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Name : lysS (BT_2122) Accession : NP_811035.1 Strain : Bacteroides thetaiotaomicron VPI-5482 Genome accession: NC_004663 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2671083 - 2672813 bp Length : 1731 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGAATATATTAGAACTAAGTGAACAGGAAATTATTCGGCGCAATAGTCTGAATGAGCTTCGTGCAATGGGTATCGATCC GTACCCCGCTGCAGAGTATGTAACCAATGCTTTCTCTACTGATATAAAAGCAGAATTCAAAGATGAAGACGAACCGCGTC AAGTTTCTGTAGCGGGCCGTATTATGAGCCGCCGCGTGATGGGCAAGGCTTCGTTCATCGAACTGCAGGACTCTAAAGGT CGTATACAGGTATACATCACACGTGATGACATCTGTCCGGGAGAAGACAAGGAATTGTACAACTCTGTATTCAAACGCCT GCTCGACTTAGGTGACTTCGTAGGTATCGAAGGTTTCGTGTTCCGTACACAAATGGGCGAAATCAGTATCCATGCCAAGA AACTGACCGTACTTGCCAAGTCTATCAAACCGCTGCCTATCGTAAAATATAAAGACGGCGTAGCTTACGACTCTTTTGAA GATCCCGAACTCCGTTATCGCCAACGTTATGTGGACCTGGTAGTAAACGAAGGCATCAAAGAGACATTCGAAAAGCGTGC CACCGTAGTGAGAACACTGCGCAACGCCCTCGACGAAGCCGGATATACGGAAGTAGAAACACCGATCCTGCAATCCATCG CAGGCGGAGCAAGCGCACGTCCGTTCATCACTCACCACAACTCGCTGGATATAGACCTCTACCTGCGCATCGCAACGGAA CTTTATCTGAAACGACTCATCGTAGGTGGTTTTGAAGGTGTATACGAAATAGGAAAGAACTTCCGTAACGAGGGAATGGA CAGAACCCACAACCCCGAATTCACTTGTATGGAACTTTATGTACAGTACAAGGATTACAACTGGATGATGAGCTTCACCG AAAAGTTGCTGGAACGCATCTGTATCGCCGTAAACGGAAGCACCGAAACCGTTGTAGACGGAAAGACAATCAGCTTTAAA GCTCCTTACCGCCGTCTGCCTATCCTCGACGCCATCAAAGAAAAGACAGGATATGACCTCAACGGCAAGAGCGAAGAAGA AATCCGTCAGATCTGCAAAGAACTGAAGATGGAAGAAATCGACGACACCATGGGCAAAGGCAAACTGATTGATGAAATCT TCGGTGAATTCTGTGAAGGCAGCTACATCCAGCCGACTTTCATCACCGATTATCCGGTGGAAATGTCGCCTCTGACAAAG ATGCACCGTTCCAAACCTGGACTGACCGAACGTTTCGAACTGATGGTAAACGGCAAGGAACTGGCCAATGCCTACTCGGA ATTGAACGATCCGCTGGATCAGGAAGAACGCTTCAAAGAACAGATGCGTCTTGCCGACAAGGGTGACGACGAGGCAATGA TTATCGACCAGGATTTCCTGCGTGCTTTGCAATATGGTATGCCTCCTACATCCGGCATCGGTATCGGTATCGACCGTCTG GTGATGCTGATGACAGGACAGACCACCATTCAGGAAGTACTGTTCTTCCCGCAAATGCGTCCGGAGAAAGTAATCAAGAA AGACCCTGCCGCCAAATACATGGAACTGGGTATTGCAGAAGACTGGGTGCCGGTCATCCAGAAAGCCGGCTACAACACAG TAGCTGATATGCAGGATGTTAATCCGCAAAAGTTGCACCAGGACATCTGCGGAATCAATAAGAAATACAAATTAGAACTG ACCAATCCAAGCGTGAACGACGTGACCGAGTGGATAAATAAACTTAAATAA Protein sequence : MNILELSEQEIIRRNSLNELRAMGIDPYPAAEYVTNAFSTDIKAEFKDEDEPRQVSVAGRIMSRRVMGKASFIELQDSKG RIQVYITRDDICPGEDKELYNSVFKRLLDLGDFVGIEGFVFRTQMGEISIHAKKLTVLAKSIKPLPIVKYKDGVAYDSFE DPELRYRQRYVDLVVNEGIKETFEKRATVVRTLRNALDEAGYTEVETPILQSIAGGASARPFITHHNSLDIDLYLRIATE LYLKRLIVGGFEGVYEIGKNFRNEGMDRTHNPEFTCMELYVQYKDYNWMMSFTEKLLERICIAVNGSTETVVDGKTISFK APYRRLPILDAIKEKTGYDLNGKSEEEIRQICKELKMEEIDDTMGKGKLIDEIFGEFCEGSYIQPTFITDYPVEMSPLTK MHRSKPGLTERFELMVNGKELANAYSELNDPLDQEERFKEQMRLADKGDDEAMIIDQDFLRALQYGMPPTSGIGIGIDRL VMLMTGQTTIQEVLFFPQMRPEKVIKKDPAAKYMELGIAEDWVPVIQKAGYNTVADMQDVNPQKLHQDICGINKKYKLEL TNPSVNDVTEWINKLK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-96 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | NP_811035.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-96 | 44 |
