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Name : stdB (t2939) Accession : NP_806632.1 Strain : Salmonella enterica Ty2 Genome accession: NC_004631 Putative virulence/resistance : Virulence Product : outer membrane fimbrial usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3031364 - 3033853 bp Length : 2490 bp Strand : - Note : corresponds to STY3176 from Accession AL513382: Salmonella typhi CT18 DNA sequence : ATGAAAATTACCCGGCTTGCCATTCTGATTACCCTGACATTTTCCGTCCTGAAGTCGCAGGCCACGGAGTTCAATGCCAG CCTGCTGGACAGCGGGAACCTGTCTAACGTGGACCTCACGGCCTTCAGCCGCGAGGGGTATGTGGCGCCCGGTAACTATA TTCTCGATATCTGGCTCAATGACCAGCCGGTACGGGAACAGTATCCAGTCAGGGTTGTACCGGTTGCCGGACGCGATGCG GTCGTCATCTGTGTGACAACAGACATGGTGGCCATGCTGGGTCTTAAGGATAAGATTATTCATGGCCTGAAACCCGTTAC CGGTATCCCGGACGGGCAATGCCTTGAGCTGCGCTCCGCTGACAGTCAGGTACGGTACAGCGCTGAAAATCAGCGTCTGA CCTTCATTATTCCCCAGGCCTGGATGCGTTATCAGGACCCGGACTGGGTGCCCCCTTCACGCTGGAGCGACGGCGTCACC GCTGGCCTGCTTGATTACAGCCTGATGGTCAACCGCTATATGCCGCAGCAGGGGGAAACCTCTACCAGCTACAGCCTCTA CGGCACCGCCGGGTTTAATCTCGGCGCCTGGCGGTTGCGGAGCGATTACCAGTACAGCCGTTTTGACAGTGGGCAGGGCG CATCACAGTCCGATTTTTATCTGCCGCAGACGTATCTGTTCCGTGCCCTGCCAGCACTGCGCTCAAAACTGACGCTCGGA CAGACGTACCTCAGCTCCGCTATTTTTGACTCCTTCCGCTTTGCTGGGCTCACTTTGGCCAGCGATGAGCGCATGCTGCC GCCCTCTCTTCAGGGGTATGCCCCGAAAATTAGCGGCATTGCGAACAGTAATGCACAGGTCACCGTCAGCCAGAATGGTC GCATTCTGTACCAGACCCGGGTGTCACCGGGGCCTTTTGAGCTTCCCGACCTGAGCCAGAATATCAGCGGCAACCTGGAT GTCAGCGTCCGGGAAAGCGACGGCAGCGTCCGGACCTGGCAGGTCAACACGGCTAGCGTCCCCTTTATGGCACGCCAGGG ACAGGTTCGCTATAAGGTGGCCGCCGGACGTCCGCTGTACGGCGGTACGCATAACAACAGCACGGCCAGCCCTGACTTTC TGCTCGGGGAGGCCACCTGGGGAGCATTTAACAACACGTCGCTGTATGGCGGCCTCATTGCCTCCACCGGCGACTACCAG TCCGCGGCGCTCGGGATCGGCCAGAATATGGGGCTGCTGGGCGCTCTGTCTGCGGACGTCACCCGCTCAGATGCGCGGTT GCCGCACGGGCAGAAGCAGTCCGGTTACAGCTACCGTATCAACTATGCCAAAACGTTTGATAAAACCGGCAGTACCCTGG CGTTCGTCGGATACCGCTTCTCGGACCGCCATTTTCTGTCCATGCCGGAGTACCTGCAGCGTCGGGCCACCGACGGCGGC GATGCATGGCATGAAAAACAGAGCTACACCGTGACTTATAGCCAGTCCGTTCCGGTACTCAACATGAGCGCGGCCCTCTC GGTAAGCCGGCTCAATTACTGGAATGCGCAGTCCAACAATAACTACATGCTCAGCTTCAACAAAGTGTTCAGTCTCGGCG AGCTTCAGGGGCTCTCGGCCTCGGTGTCGTTTGCCCGTAACCAGTACACCGGCGGGGGCAGCCAGAATCAGGTCTACGCC ACCATCAGTATCCCGTGGGGCGACAGCCGCCAGGTGAGCTACAGCGTGCAGAAGGATAACCAGGGCGGCCTGCAGCAGAC CGTGAATTACAGCGATTTCCATAACCCGGACACCACATGGAACATCAGCGCCGGTCATAACCGCTATGACACCGGCAGTA ACAGCAGCTTCAGCGGCAGCGTGCAGAGCCGTCTGCCGTGGGGCCAGGCGGCAGCGGACGCCACCCTGCAGCCCGGACAG TACCGCAGCCTGGGCCTGAGCTGGTACGGCTCGGTGACCGCCACCGCCCACGGCGCCGCCTTCAGCCAGTCGATGGCCGG GAATGAGCCTCGCATGATGATAGATACCGGAGACGTGGCCGGTGTACCGGTGAACGGCAACAGCGGGGTGACCAACCGCT TCGGGGTGGGCGTGGTGAGCGCCGGCAGCAGCTATCGGCGCAGCGATATTTCGGTTGATGTGGCCGCCCTGCCAGAGGAC GTGGACGTTAGCAGCTCCGTCATCAGCCAGGTGCTGACGGAGGGCGCGGTGGGCTACCGGAAGATTGACGCCAGCCAGGG GGAGCAGGTGCTCGGTCATATCCGGCTGGCTGATGGCGCCAGTCCACCGTTTGGCGCCCTGGTGGTGTCCGGAAAAACCG GCAGAACCGCGGGGATGGTCGGGGATGACGGTCTGGCCTACCTGACCGGACTCAGCGGGGAAGACCGCCGGACCCTGAAC GTGCCCTGGGATGGCCGGGTGCAGTGCAGACTCACCCTGCCGGAAACGGTGACACTCAGTCGGGGGCCGCTGTTACTGCC CTGCAGATAA Protein sequence : MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGRDA VVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT AGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLD VSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTASPDFLLGEATWGAFNNTSLYGGLIASTGDYQ SAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRATDGG DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSFNKVFSLGELQGLSASVSFARNQYTGGGSQNQVYA TISIPWGDSRQVSYSVQKDNQGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQ YRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED VDVSSSVISQVLTEGAVGYRKIDASQGEQVLGHIRLADGASPPFGALVVSGKTGRTAGMVGDDGLAYLTGLSGEDRRTLN VPWDGRVQCRLTLPETVTLSRGPLLLPCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 3e-125 | 41 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 5e-125 | 41 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 7e-125 | 41 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 7e-125 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| stdB | NP_806632.1 | outer membrane fimbrial usher protein | VFG1548 | Protein | 2e-125 | 41 |
| stdB | NP_806632.1 | outer membrane fimbrial usher protein | VFG0884 | Protein | 2e-125 | 41 |
| stdB | NP_806632.1 | outer membrane fimbrial usher protein | VFG0895 | Protein | 3e-125 | 41 |
