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Name : safC (t2558) Accession : NP_806279.1 Strain : Salmonella enterica Ty2 Genome accession: NC_004631 Putative virulence/resistance : Virulence Product : outer-membrane fimbrial usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 2634970 - 2637480 bp Length : 2511 bp Strand : - Note : corresponds to STY0336 from Accession AL513382: Salmonella typhi CT18 DNA sequence : ATGAAGTTCAAACAACCTGCCTTGCTACTGTTTATCGCGGGAGTGGTTCACTGCGCAAATGCGCACACTTACACATTCGA TGCATCAATGTTGGGCGATGCAGCGAAAGGGGTTGATATGTCGCTCTTTAACCAGGGGGTACAACAGCCAGGGACTTATC GAGTGGACGTAATGGTGAATGGTAAACGTGTCGACACCCGTGATGTGGTGTTCAAATTAGAAAAGGATGGGCAAGGAACG CCTTTTCTGGCTTCTTGTTTGACGGTCAGTCAGCTTTCACGCTACGGCGTAAAAACGGAAGATTACCCTCAGTTGTGGAA AGCAGCAAAGACCCCAGATGAGTGTGCGGATCTGACCGCCATTCCACAGGCTAAAGCGGTACTGGATATCAATAATCAGC AACTGCAACTGAGTATTCCGCAGTTGGCGTTGCGTCCGGAATTTAAGGGGATCGCTCCAGAAGATCTTTGGGATGATGGT ATTCCGGCGTTTCTGATGAACTACAGTGCGAGGACAACGCAGACGGATTACAAAATGGATATGGTGGGGCGTGACAACTC TTCCTGGGTACAACTGCAACCGGGAATCAATATAGGTGCGTGGCGTGTCCGCAATGCGACCAGCTGGCAGCGGAGTAGTC AACTGTCGGGGAAGTGGCAGGCAGCATATACCTATGCTGAGCGTGGACTGTACTCACTAAAAAGTCGTCTGACTCTGGGG CAAAAGACTTCGCAGGGGGAGATATTTGATAGTGTGCCATTTACCGGTGTGATGTTGGCATCGGATGACAACATGGTGCC CTACAGTGAGCGGCAGTTTGCTCCGGTAGTGCGTGGGATTGCCCGCACGCAGGCTCGGGTGGAGGTCAAACAGAATGGTT ACACCATTTACAACACCACCGTGGCGCCCGGACCGTTTGCACTGCGGGATCTGTCGGTAACAGACAGTAGTGGTGATCTG CATGTCACCGTGTGGGAGGCCGATGGCAGTACACAAATGTTTGTGGTGCCGTATCAGACCCCGGCGATAGCACTGCACCA GGGATATTTGAAGTACAGCCTGTTGGCGGGCCGATACCGATCGTCAGACTCTGCAACGGATAAGGCGCAGATCGCGCAGG CTACGTTGATGTATGGTCTGCCGTGGAATCTCACTGCATATGGCGGTATACAGAGTGCAACGCACTATCAAGCTGCATCG CTTGGTTTGGGAGGATCTCTCGGGCGGTGGGGGAGTTTATCTGTCGATGGAAGCGACACACACAGTCAGCGTCAGGGGGA AGCGGTACAGCAAGGAGCCTCCTGGCGACTGCGTTACAGCAACCAGCTGACTGCGACGGGGACAAATTTGTTTCTGACGA GATGGCAATATGCCTCGCAGGGCTATAACACCCTATCCGATGTGCTCGACAGTTATCGACATAATGGCAACCGTCTATGG TCGTGGCGGGAAAATTTGCAGCCGAGCTCACGTACCACCCTGATGTTGAGTCAGTCATGGGGGAGGCATTTGGGCAATCT GAGTTTAATCGGTTCCCGTACCGACTGGCGTAATCGCCCCGGTCATGATGACAGCTACGGACTGAGTTGGGGAACCTCTA TCGGAGGGGGCTCGCTGTCATTGAACTGGAATCAAAACAGAACGCTGTGGCGCAATGGCGGGCACCGTAAAGAGAACATA ACCAGCCTGTGGTTCAGTATGCCATTAAGCCGCTGGACGGGGAATAATGTAAGTGCTAGTTGGCAGATGACTTCACCATC ACACGGTGGTCAGACGCAACAAGTGGGGGTCAACGGAGAGGCATTCAGTCAGCAACTGGATTGGGAGGTGCGTCAGAGTT ACCGTGCCGATGCCCCGCCAGGTGGTGGTAATAACAGCGCATTGCACTTGGCATGGAATGGGGCTTACGGCCTGTTAGGT GGTGACTATAGCTACAGCCGGGCGATGCGCCAGATGGGAGTCAATATCGCGGGAGGTATAGTTATCCACCATCATGGTGT GACGCTGGGGCAACCTTTGCAAGGCTCAGTGGCGCTGGTTGAAGCGCCAGGGGCCTCGGGGGTGCCAGTTGGCCCCTGGC CTGGCGTTAAGACGGATTTTCGTGGCGACACCACAGTGGGCAACCTGAGCGTCTATCAGGAGAATACAGTCAGCCTCGAT CCGTCGCAACTACCGGATGACGCAGAGGTCACACAAACCGATGTGCGCGTGGTGCCAACCGAAGGGGCGGTGGTGGAAGC GAAGTTTCACACTCGCATCGGGGCCAGGGCACTGATGACGCTGAAACGGGAAGATGGTAGCGCCATTCCTTTCGGGGCGC AGGTTATAGTCAATGGGCAGGATGGCAGCGCTGATCTGGTGGATACTGATAGCCAGGTTTATCTCACTGGTCTGGCGGAT AAGGGCGAACTGACGGTGAAATGGGGAGCACAGCAATGTCGGGTTAACTACCACCTACCTGCCCACAAGGGAATCGCGGG CTTGTATCAAATGAGCGGTCTCTGCAGATAG Protein sequence : MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDG IPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDL HVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAS LGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGGHRKENI TSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLG GDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQVYLTGLAD KGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| safC | NP_454907.1 | outer-membrane fimbrial usher protein | Not tested | SPI-6 | Protein | 0.0 | 100 |
| afaC | AAD44022.2 | AfaC | Virulence | PAI-I AL862 | Protein | 0.0 | 50 |
| afaC | ADD91743.1 | putative AfaC-VIII usher protein | Not tested | PAI-I AL862 | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| safC | NP_806279.1 | outer-membrane fimbrial usher protein | VFG0853 | Protein | 0.0 | 50 |
| safC | NP_806279.1 | outer-membrane fimbrial usher protein | VFG0944 | Protein | 0.0 | 50 |
| safC | NP_806279.1 | outer-membrane fimbrial usher protein | VFG0849 | Protein | 4e-178 | 46 |
| safC | NP_806279.1 | outer-membrane fimbrial usher protein | VFG0857 | Protein | 1e-173 | 45 |
| safC | NP_806279.1 | outer-membrane fimbrial usher protein | VFG0419 | Protein | 3e-169 | 44 |
