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Name : sigD (t1828) Accession : NP_805600.1 Strain : Salmonella enterica Ty2 Genome accession: NC_004631 Putative virulence/resistance : Virulence Product : cell invasion protein Function : - COG functional category : - COG ID : - EC number : - Position : 1890441 - 1892126 bp Length : 1686 bp Strand : + Note : corresponds to STY1121 from Accession AL513382: Salmonella typhi CT18 DNA sequence : ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGCCTACAAAAAACCTTATACAA CGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCTAAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAG AACCTGGCGCGACATGGGGGAATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCAATGGCAAACCAAATGGAGTT AGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAAGAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAAC TTATTGCAGCACGCACTCAGCAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCATAACGGGCATCACTATACCAA CACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAAGATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCA GTTGGGATACCAAGAATATTCATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTTCTGCGTCAGGCCGGCGCTGA AAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGTAAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGG TAAGCCTGAAACTGGTATCCGTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAATAAAGATGGCGATCTACAGAC GGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGTGTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAG CATCAGATAGCTATAATGCCGAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGCCAGATTAAGGATATCTGGAA AAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAACTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACG CGGTGCCCGCCTGGAATTGTAAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAAATTTTCCAAAAAGTATTACT GAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGCGGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGG TGCTCAATCTTTCCTATCAAAAACGAGTTGGGGATGAAAATATTTGGCAGTCAGTAAAAGGTATTTCTTCATTAATCACA TCTTGA Protein sequence : MQIQSFYHSASLKTQEAFKSLQKTLYNGMQILSGQGKAPAKAPDARPEIIVLREPGATWGNYLQHQKTSNHSLHNLYNLQ RDLLTVAATVLGKQDPVLTSMANQMELAKVKADRPATKQEEAAAKALKKNLIELIAARTQQQNGLPAKEAHRFAAVAFRD AQVKQLNNQPWQTIKNTLTHNGHHYTNTQLPAAEMKIGAKDIFPSAYEGKGVCSWDTKNIHHANNLWMSTVSVHEDGKDK TLFCGIRHGVLSPYHEKDPLLRQAGAENKAKEVLAAALFSKPELLNRALEGEAVSLKLVSVGLLTASNIFGKEGTMVEDQ MRAWQSLTQPGKMIHLKIRNKDGDLQTVKIKPDVAAFNVGVNELALKLGFGLKASDSYNAEALHQLLGNDLRPEARPGGW VGEWLAQYPDNYEVVNTLARQIKDIWKNNQHHKDGGEPYKLAQRLAMLAHEIDAVPAWNCKSGKDRTGMMDSEIKRELIS FHQTHMLSAPGSLPDSGGQKIFQKVLLNSGNLEIQKQNTGGAGNKVMKNLSPEVLNLSYQKRVGDENIWQSVKGISSLIT S |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sigD | NP_455588.1 | cell invasion protein | Virulence | SPI-5 | Protein | 0.0 | 100 |
| sopB | YP_216030.1 | outer protein | Virulence | SPI-5 | Protein | 0.0 | 99 |
| sopB | NP_460064.1 | secreted effector protein | Virulence | SPI-5 | Protein | 0.0 | 99 |
| sopB | AAC33723.1 | SopB | Virulence | SPI-5 | Protein | 0.0 | 97 |
| sopB | AAK27355.1 | SopB | Virulence | SPI-5 | Protein | 0.0 | 91 |
| sopB | AAK27356.1 | SopB | Virulence | SPI-5 | Protein | 8e-175 | 86 |
| sopB | AAK27357.1 | SopB | Virulence | SPI-5 | Protein | 1e-158 | 77 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sigD | NP_805600.1 | cell invasion protein | VFG0465 | Protein | 0.0 | 99 |
| sigD | NP_805600.1 | cell invasion protein | VFG0992 | Protein | 8e-82 | 47 |
