Gene Information

Name : t1279 (t1279)
Accession : NP_805082.1
Strain : Salmonella enterica Ty2
Genome accession: NC_004631
Putative virulence/resistance : Virulence
Product : pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1345995 - 1346669 bp
Length : 675 bp
Strand : +
Note : corresponds to STY1709 from Accession AL513382: Salmonella typhi CT18

DNA sequence : 
ATGAGTTTTACTTCACTTCCTCTGACGGAAATTAACCATAAGCTACCCGCTCGAAATATTATTGAGTCACAGTGGATAAC
ATTACAATTAACTTTATTTGCACAAGAGCAACAAGCTAAGAGAGTTTCACATGCTATTGTGAGCTCCGCTTACCGTAAGG
CTGAAAAAATCATCCGAGACGCCTATCGTTATCAGCGTGAACAGAAAGTTGAGCAGCAACAAGAAATAGCGTGGTTGCGT
AAAAATACGCTGGAAAAAATGGAAGTAGAATGGCTGGAACAACATGTAAAACATTTACAAGAAGATGAAAATCAATTTCG
TTCATTGGTCGATCACGCCGCGCATCATATTAAAAATAGTATAGAACAGGTTCTGTTGGCCTGGTTCGACCAACAGTCGG
TAGACAGTGTTATGTGCCATCGTCTGGCACGCCAGGCCACGGCTATGGCGGAAGAGGGAGCGCTTTATTTGCGTATTCAT
CCTGAAAAAGAGGCATTGATGCGTGAAACTTTTGGCAAGCGGTTTACGCTGATTATCGAGCCTGGTTTCTCTCCCGATCA
GGCTGAACTTTCCTCAACACGATATGCCGTTGAGTTTTCACTTTCTCGTCATTTCAACGCGTTACTGAAATGGTTACGTA
ATGGTGAAGATAAAAGAGGTAGCGATGAATATTAA

Protein sequence : 
MSFTSLPLTEINHKLPARNIIESQWITLQLTLFAQEQQAKRVSHAIVSSAYRKAEKIIRDAYRYQREQKVEQQQEIAWLR
KNTLEKMEVEWLEQHVKHLQEDENQFRSLVDHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIH
PEKEALMRETFGKRFTLIIEPGFSPDQAELSSTRYAVEFSLSRHFNALLKWLRNGEDKRGSDEY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1709 NP_456117.1 putative pathogenicity island protein Virulence SPI-2 Protein 6e-102 100
t1279 NP_805082.1 pathogenicity island protein Not tested SPI-2 Protein 6e-102 100
ssaK NP_460376.1 type III secretion system apparatus protein Virulence SPI-2 Protein 9e-100 99
ssaK CAA70533.1 secretion system apparatus Virulence SPI-2 Protein 1e-98 99
ssaK YP_216419.1 secretion system apparatus protein SsaK Virulence SPI-2 Protein 3e-100 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
t1279 NP_805082.1 pathogenicity island protein VFG0511 Protein 3e-100 99