Gene Information

Name : sseF (t1272)
Accession : NP_805075.1
Strain : Salmonella enterica Ty2
Genome accession: NC_004631
Putative virulence/resistance : Virulence
Product : pathogenicity island effector protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1342381 - 1343163 bp
Length : 783 bp
Strand : +
Note : corresponds to STY1716 from Accession AL513382: Salmonella typhi CT18

DNA sequence : 
ATGAAAATTCATATTCCGTCAGCGGCAAGCAATATAGTCGATGGTAATAGTCCTCCTTCCGGTATACAAGCGAAGGAGGC
ATCGTTTCCTCCCCCTGAAATTCCAGCCCCTGGCACCCCTACAGTTCCTGTGGTGCTTACGCCTGAACAAATAAGGCAGC
AGAGGGATTATGCTATACATTTTATGCAATACACGATTCGTGCGCTGGGGGCGACAGTCGTGTTTGGATTATCGGTTGCT
GCAGCGGTAATTTCTGGCGGAGCAGGATTACCCATTGCTATTCTTGCGGGGGCGGCGCTCGTGATTGCTATTGGGGATGC
TTGCTGTGCGTATCATAATTATCAATTGATATGTCAGCAAAAGGCGCCGTTACAAACCGCCAGTGATAGCGTTGCTCTTG
TGGTCAGTGCGCTGGCCTTAAAATGCGGGGCAAGTCTTAACTGCGCTAACACCCTTGCTAATTGTCTTTCTTTATTAATA
CGTTCAGGAATCGCTATTTCTATGTTGGTTTTACCCCTACAGTTTCCACTGCCCGCGGCTGAAAATATAGCGGCCTCTTT
GGACATGGGGAGTGTAATTACCTCCGTTAGCCTGACGGCGATAGGTGCGGTACTGGATTATTGCCTTGCCCGCCCCTCTG
GCGACGATCAGGAAAATTCTGTTGATGAACTTCATGCCGATCCCAGTGTGTTATTGGCGGAACAAATGGCATTGCTCTGT
CAATCTGCTACTACACCTGCATTAATGGACAGTTCTGGTCATACATCTCGGGGAGAACCATGA

Protein sequence : 
MKIHIPSAASNIVDGNSPPSGIQAKEASFPPPEIPAPGTPTVPVVLTPEQIRQQRDYAIHFMQYTIRALGATVVFGLSVA
AAVISGGAGLPIAILAGAALVIAIGDACCAYHNYQLICQQKAPLQTASDSVALVVSALALKCGASLNCANTLANCLSLLI
RSGIAISMLVLPLQFPLPAAENIAASLDMGSVITSVSLTAIGAVLDYCLARPSGDDQENSVDELHADPSVLLAEQMALLC
QSATTPALMDSSGHTSRGEP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseF NP_456124.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 8e-89 100
sseF NP_805075.1 pathogenicity island effector protein Virulence SPI-2 Protein 8e-89 100
sseF NP_460369.1 secreted effector protein Virulence SPI-2 Protein 2e-85 97
sseF AAC28885.1 SseF Virulence SPI-2 Protein 1e-85 97
sseF CAA12191.1 SseF Virulence SPI-2 Protein 3e-84 96
sseF YP_216412.1 secretion system effector protein SseF Virulence SPI-2 Protein 2e-82 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sseF NP_805075.1 pathogenicity island effector protein VFG0505 Protein 8e-86 97