Gene Information

Name : ssaD (t1263)
Accession : NP_805066.1
Strain : Salmonella enterica Ty2
Genome accession: NC_004631
Putative virulence/resistance : Virulence
Product : pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1336343 - 1337554 bp
Length : 1212 bp
Strand : +
Note : corresponds to STY1725 from Accession AL513382: Salmonella typhi CT18

DNA sequence : 
ATGGCATATCTCATGGTTAATCCAAAGAGTTCCTGGAAAATACGTTTTTTAGGTCACGTTTTACAAGGCCGGGAAGTATG
GCTGAATGAAGGTAACCTGTCACTGGGGGAGAAGGGATGCGATATTTGTATTCCGCTGGCTATAAATGAAAAAATTATTC
TGAGAGAACAGGCAGATAGTTTATTTGTTGATGCCGGGAAAGCCAGAGTTAGAGTTAATGGCCGCAGATTTAATCCAAAT
AAGCCGCTACCATCCAGTGGGGTTTTGCAGGTTGCGGGAGTGGCTATCGCGTTTGGTAAACAGGATTGTGAACTTGCTGA
TTATCAAATACCCGTTTCCAGATCAGGGTACTGGTGGTTGGCTGGCGTATTCTTGATTTTCATCGGTGGAATGGGTGTCC
TGTTAAGTATTAGTGGTCAGCCTGAAACGGTAAATGACTTACCTTTGCGGGTTAAGTTTTTATTAGACAAAAGCAATATT
CATTATGTGCGGGCGCAATGGAAAGAAGATGGAAGCCTGCAGTTGTCCGGTTATTGCTCGTCAAGCGAACAGATGCAAAA
GGTGAGAGCGACTCTCGAATCATGGGGGGTCATGTATCGGGATGGTGTAATCTGTGATGACTTATTGATACGAGAAGTGC
AGGATGTTTTGATAAAAATGGGTTACCCGCATGCTGAAGTATCCAGCGAAGGGCCGGGGAGCGTGTTAATTCATGATGAT
ATACAAATGGATCAGCAATGGCGTAAGGTTCAACCATTACTTGCAGATATTCCCGGGTTATTGCACTGGCAGATTAGTCA
TTCTCATCAGTCTCAGGGGGATGATATTATTTCTGCGATAATAGAGAACGGTTTAGTGGGGCTTGTCAATGTTACGCCAA
TGCGGCGCTCTTTTGTTATCAGTGGTGTACTGGATGAATCTCATCAACGCATTTTGCAAGAAACGTTAGCAGCATTAAAG
AAAAAGGACCCCGCTCTTTCTTTAATTTATCAGGATATTGCGCCTTCTCATGATGAAAGCAAGTATCTGCCTGCGCCAGT
GGCTGGCTTTGTACAGAGTCGCCATGGTAATTACTTATTACTGACGAATAAAGAGCGTTTACGTGTAGGGGCATTGTTAC
CCAATGGGGGAGAAATTGTCCATCTGAGTGCCGATGTGGTAACGATTAAACATAATGATACTTTGATTAACTATCCATTA
GATTTTAAGTGA

Protein sequence : 
MAYLMVNPKSSWKIRFLGHVLQGREVWLNEGNLSLGEKGCDICIPLAINEKIILREQADSLFVDAGKARVRVNGRRFNPN
KPLPSSGVLQVAGVAIAFGKQDCELADYQIPVSRSGYWWLAGVFLIFIGGMGVLLSISGQPETVNDLPLRVKFLLDKSNI
HYVRAQWKEDGSLQLSGYCSSSEQMQKVRATLESWGVMYRDGVICDDLLIREVQDVLIKMGYPHAEVSSEGPGSVLIHDD
IQMDQQWRKVQPLLADIPGLLHWQISHSHQSQGDDIISAIIENGLVGLVNVTPMRRSFVISGVLDESHQRILQETLAALK
KKDPALSLIYQDIAPSHDESKYLPAPVAGFVQSRHGNYLLLTNKERLRVGALLPNGGEIVHLSADVVTIKHNDTLINYPL
DFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaD NP_805066.1 pathogenicity island protein Virulence SPI-2 Protein 0.0 100
ssaD YP_216403.1 secretion system apparatus protein SsaD Virulence SPI-2 Protein 0.0 100
ssaD NP_456133.1 putative pathogenicity island protein Virulence SPI-2 Protein 0.0 100
spiB AAC44302.1 SpiB Virulence SPI-2 Protein 5e-152 99
ssaD NP_460360.1 virulence protein Virulence SPI-2 Protein 0.0 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssaD NP_805066.1 pathogenicity island protein VFG0496 Protein 0.0 99