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Name : ssrA (t1260) Accession : NP_805063.1 Strain : Salmonella enterica Ty2 Genome accession: NC_004631 Putative virulence/resistance : Virulence Product : two-component sensor kinase Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG0642 EC number : - Position : 1331303 - 1334065 bp Length : 2763 bp Strand : - Note : corresponds to STY1728 from Accession AL513382: Salmonella typhi CT18 DNA sequence : ATGAATTTGCTCAATCTCAAGAATACGCTGCAAACATCTTTAGTAATCAGGCTAACTTTTTTATTTTTATTAACAACCAT AATTATTTGGCTGCTATCTGTGATTACTGCAGCTTATATATCAATGGTTCAGAAACGGCAGCATATAATAGAGGATTTAT CCGCTCTATCCGAGATGAATATTGTACTAAGCAATCAACGATTTGAAGAGGCTGAACGTGACGCTAAAAATTTAATGTAT CAATGCTCATTAGCGACTGAGATTCATCATAATGATATTTTCCCTGAGGTGAGCCGGCATCTTTCTGTCGGTCCTTCAAA TTGCACGCCGACGCTAAACGGAGAGAAGCATCGTCTCTTTCTGCAGTCCTCTGATATCGATGAAAAAAGCTTTCGTCGCG ATAGTTTTATTCTTAACCATAAAAATGAGATTTCGTTATTATCTACTGATAACCCTTCAGATTATTCAACTCTACAGCTT TTAACGCGAAAAAGCTTTCCTTTATACCCAACCCATGCCGGGTTTTACTGGAGTGAACCAGAATACATAAACGGCAAAGG ATGGCACGCTTCCGTTGCGGTTGCCGATCAGCAAGGCGTATTTTTTGGGGTGATGGTTAAACTTCCTGATCTCATTTCTA AGAGCCACCTACCATTAGATGATAGTATTCGAGTATGGCTGGATCAAAACAACCACTTATTGCCGTTTTCATACATCCCG CAAAAAATACGTACACAGTTAGAAAATGTAACGCTGCATGATGGATGGCAACAAATTCCCGGATTTCTGATATTACGCAC AACTTTGCATGGCCCCGGATGGAGTCTGGTTACGCTGTACCCATACGGTAATCTACATAATCGCATCTTAAAAACTATCC TCCAACAAATCCCCTTTACATTAACAGCATTGGTGTTGATGACGTCGGCTTTTTGCTGGTTACTACATCGCTCACTGGCC AAACCGTTATGGCGTTTTGTCGATATCATTAATAAAACCGCAACTGCACCGCTGAGCACACGTTTACCAGCACAACGACT GGATGAATTAGATAGTATTGCCGGTGCTTTTAACCAACTACTTGATACCCTACAAGTCCAATACGACAATCTGGAAAACA AAGTCGCAGAGCGCACCCAGGCGCTAAATGAAGCAAAAAAACGCGCTGAGCAAGCTAACAAACGTAAAAGCATTCATCTT ACGGTAATAAGTCATGAGTTACGTACTCCGATGAATGGCGTACTCGGTGCAATTGAATTATTACAAACCACCCCTTTAAA CATAGAGCAGCAAGGATTAGCTGATACCGCCAGAAATTGCACACTGTCTTTGTTAGCTATTATTAATAATCTGCTGGATT TTTCACGCATCGAGTCTGGTCATTTCACATTACATATGGAAGAAACAGCGTTACTGCCGTTACTGGACCAGGCAATGCAA ACCATCCAGGGGCCAGCACAAAGCAAAAAACTGTCATTACGTACTTTTGTTGGTCAACATGTCCCCCTCTATTTTCATAC CGACAGTATCCGTTTACGGCAAATTTTGGTTAATTTACTCGGGAACGCGGTAAAATTTACCGAAACCGGAGGGATACGTC TGACGGTCAAGCGTCATGAGGAACAATTAATATTTCTGGTTAGCGATAGCGGTAAAGGGATTGAAATACAGCAGCAGTCT CAAATCTTTACTGCTTTTTATCAAGCAGACACAAATTCGCAAGGTACAGGAATTGGACTGACTATTGCGTCAAGCCTGGC TAAAATGATGGGCGGTAATCTGACACTAAAAAGTGTCCCCGGGGTTGGAACCTGTGTCTCGCTAGTATTACCCTTACAAG AATACCAACCGCCTCAACAAATTAAAGGGACACTGTCAGCGCCGTTCTGCCTGCATCGCCAACTGGCTTGCTGGGGAATA CGCGGCGAACCACCCCACCAGCAAAATGCGCTTCTCAACGCTGAGCTTTTGTATTTCCCCGGAAAACTCTACGACCTGGC GCAACAGTTAATATTGTGTACACCAAATATACCAATAATAAATAATTTGTTACCACCCTGGCAGTTACAGATTCTTTTGG TTGATGATGCCGATATTAATCGGGATATCATCGGCAAAATGCTTGTCAGCCTGGGCCAACACGTCACTATTGCCGCCAGT AGTAACGAGGCTCTGACTTTATCACAACAGCAACGATTCGATTTAGTACTGATTGACATTAGAATGCCAGAAATAGATGG TATTGAATGTGTACAATTATGGCACGATGAGCCGAATAATTTAGATCCTGACTGCATGTTTGTGGCGCTATCCGCTAGCG TAGCGACAGAAGATATTCATCGTTGTAAAAAAAATGGGATTCATCATTACATTACCAAACCAGTGACGTTGGCTACCTTA GCTCGCTATATCAGTATTGCCGCAGAATACCAACTTTTACGAAATATAGAGCTACAGGAGCAGGATCCAAGTCGCTGCTC AGCGCTACTGGCGACAGATGATATGGTCATTAATAGCAAGATTTTCCAATCACTGGACCTCTTGCTGGCTGATATTGAAA ATGCCGTATCGGCTGGAAAAAAAATCGATCAGTTAATTCACACATTAAAAGGCTGTTTAGGTCAAATAGGGCAGACTGAA TTGGTATGCTATGTCATAGACATTGAGAATCGCGTAAAAATGGGGAAAATCATCGCGCTGGAAGAACTAACCGACTTACG CCAGAAAATACGTATGATCTTCAAAAACTACACCATTACTTAA Protein sequence : MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVITAAYISMVQKRQHIIEDLSALSEMNIVLSNQRFEEAERDAKNLMY QCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLFLQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQL LTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVMVKLPDLISKSHLPLDDSIRVWLDQNNHLLPFSYIP QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKTILQQIPFTLTALVLMTSAFCWLLHRSLA KPLWRFVDIINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHL TVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQS QIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQQIKGTLSAPFCLHRQLACWGI RGEPPHQQNALLNAELLYFPGKLYDLAQQLILCTPNIPIINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLATL ARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAGKKIDQLIHTLKGCLGQIGQTE LVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFKNYTIT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ssrA | NP_805063.1 | two-component sensor kinase | Virulence | SPI-2 | Protein | 0.0 | 100 |
| ssrA | NP_460357.1 | sensor kinase | Virulence | SPI-2 | Protein | 0.0 | 99 |
| ssrA | YP_216400.1 | secretion system regulator:sensor component | Virulence | SPI-2 | Protein | 0.0 | 99 |
| ssrA | NP_456136.1 | putative two-component sensor kinase | Virulence | SPI-2 | Protein | 0.0 | 99 |
| spiR | AAC44299.1 | SpiR | Virulence | SPI-2 | Protein | 0.0 | 99 |
| YPO0256 | YP_002345336.1 | two-component sensor/regulator | Not tested | Not named | Protein | 1e-168 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ssrA | NP_805063.1 | two-component sensor kinase | VFG0493 | Protein | 0.0 | 99 |
