Name : smpB (VP0644) Accession : NP_797023.1 Strain : Genome accession: NC_004603 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 674836 - 675321 bp Length : 486 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCAAAGAAAAAATCAAAACAAAAAGCGGGTAGTAACACTATCGCGCTGAACAAAAAAGCTCGCCACGAGTATTTCAT TGAAGATGAAATCGAAGCTGGCTTGGAGCTCCAAGGTTGGGAAGTGAAAGCCCTTCGCCAAGGTAAAGCCAATATTTCTG AAAGTTACGTATTCATGCGTGACGGTGAAGCCTTTGTGAGTGGCATGACAATCACTCCTTTAAATCAGGCATCGACACAC GTAGTGGCGAACCCTACTCGTGTGCGCAAACTACTTATGAGTCGTCGTGAACTTGACAACCTACTCGGTCGCATTAACCG TGAGGGTATGACACTTACGGCACTCTCTCTGTACTGGTCTCGCTCTTGGGTGAAGATAAAAATAGGTGTAGCAAAAGGTA AAAAGCTTCACGATAAACGTACAGATCTTAAAGAAAAAGACTGGGCAAGAGAAAAAGCACGCGTAATGAAGAGTGCACTG CGTTAA Protein sequence : MAKKKSKQKAGSNTIALNKKARHEYFIEDEIEAGLELQGWEVKALRQGKANISESYVFMRDGEAFVSGMTITPLNQASTH VVANPTRVRKLLMSRRELDNLLGRINREGMTLTALSLYWSRSWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMKSAL R |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 4e-58 | 87 |
unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-18 | 44 |