Gene Information

Name : VP1672 (VP1672)
Accession : NP_798051.1
Strain :
Genome accession: NC_004603
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 1788825 - 1789475 bp
Length : 651 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGATTCAGTTACCTGATGAGCTAAACCTCATTGTCAGCCTTGCGCTGCTGGCATTGATCCCGTTTATCGCCATGATGGC
GACCTCATTTGTGAAACTCGCGGTCGTGTTTTCGCTGCTGCGAAATGCGCTTGGCGTACAACAGATTCCGCCGAATATGG
CGCTTTATGGCTTGGCGATCATTTTGTCGATTTTCATCATGGCACCGGTTGGCTTTGAAACGTACGACTACGTAAAACAG
CACGACATTTCTTTGGAAGACTCAGCCAGCGTTGAGGGCCTGATTGAAAGTGGTTTACAGCCGTATCGCGAGTTTTTGAA
AAAGCACATTCGTGAAACCGAAGCGATATTTTTTACCGACGCAGCACGCACGCTGTGGCCACAAAAATACGTGGACCGTT
TGGAATCCGACAGCTTATTGCTGTTGCTGCCTGCATTTACGGTTAGCGAGTTAACGCGGGCTTTTGAAATCGGCTTCCTA
CTCTACTTGCCGTTTATCGCTATCGATTTGATTGTTTCCAATATTCTGCTCGCAATGGGGATGATGATGGTGTCACCAAT
GACCATTTCTCTGCCCTTCAAGTTGCTGCTTTTCGTTTTGCTTGATGGCTGGACAAAACTCACGCACGGCTTAGTGCTGA
GTTACGGTTGA

Protein sequence : 
MIQLPDELNLIVSLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ
HDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSLLLLLPAFTVSELTRAFEIGFL
LYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFKLLLFVLLDGWTKLTHGLVLSYG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 8e-64 78
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 7e-45 57
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-39 55
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-39 55
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-39 55
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 7e-42 54
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-38 54
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-38 54
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 7e-42 53
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 7e-42 53
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-41 53
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 4e-41 53
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 6e-34 53
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-42 52
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 7e-42 52
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 7e-42 52
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-34 52
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-34 52
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-34 52
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-34 52
escR AAK26700.1 EscR Virulence LEE Protein 2e-34 52
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-34 52
escR AAL57527.1 EscR Virulence LEE Protein 2e-34 52
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-34 52
escR AAC38369.1 EscR Virulence LEE Protein 1e-33 52
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-34 52
escR AAC31528.1 L0049 Virulence LEE Protein 2e-34 52
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-32 51
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-32 51
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-32 51
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-34 51
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-34 51
unnamed AAL06354.1 EscR Virulence LEE Protein 6e-34 51
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-32 50
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-29 47
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-29 47
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 4e-30 47
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 4e-30 47
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-34 47
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 8e-35 47
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-33 46
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 5e-34 46
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-33 46
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 5e-34 46
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 4e-31 46
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 1e-34 44
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 7e-35 44
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 2e-35 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VP1672 NP_798051.1 type III secretion system protein VFG0188 Protein 2e-66 77
VP1672 NP_798051.1 type III secretion system protein VFG0394 Protein 2e-62 75
VP1672 NP_798051.1 type III secretion system protein VFG0044 Protein 7e-42 56
VP1672 NP_798051.1 type III secretion system protein VFG0519 Protein 1e-39 55
VP1672 NP_798051.1 type III secretion system protein VFG0715 Protein 5e-34 52
VP1672 NP_798051.1 type III secretion system protein VFG0827 Protein 8e-35 52
VP1672 NP_798051.1 type III secretion system protein VFG0551 Protein 1e-30 47
VP1672 NP_798051.1 type III secretion system protein VFG2338 Protein 9e-24 44
VP1672 NP_798051.1 type III secretion system protein VFG1012 Protein 9e-31 43
VP1672 NP_798051.1 type III secretion system protein VFG2455 Protein 4e-32 42
VP1672 NP_798051.1 type III secretion system protein VFG1773 Protein 5e-33 41