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Name : VP1108 (VP1108) Accession : NP_797487.1 Strain : Genome accession: NC_004603 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1167853 - 1169160 bp Length : 1308 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTGGATTCTAAATTACTTCGTACAGAGCTGGATGAAACAGCTGCTAAACTGGCGCGTCGTGGCTTTAAGCTAGACGT AGAGACTATTCGTAAACTTGAAGAACAACGTAAGTCCATTCAAGTAGAAGTAGAAAATTTACAATCCACGCGTAACTCCA TTTCCAAGCAAATTGGCCAAAAAATGGCGGCTGGCGACAAAGAAGGCGCAGAAGAGATCAAGAAACAAATCGGTACTCTA GGTAGCGATCTTGACGCGAAGAAAGTTGAACTTGAGCAAGTAATGGCTCAACTAGACGAATTCACGCTTTCTGTACCAAA CATCCCAGCAGATGAAGTGCCAGATGGCAAAGACGAAAATGACAACGTTGAAATCTCTCGTTGGGGTGAGCCTAAGACTT ACGACTTCGATTTGAAAGACCACGTTGACCTAGGCGAAATGGGTGGCGGTCTAGACTTCGCAAGTGCAGTTAAGATCACT GGCGCACGTTTCATCGTGATGAAAGGTCAATTTGCTCGTCTACACCGTGCAATTGCTCAGTTCATGCTAGATCTTCATAC AGAAGAACATGGCTACACAGAGATGTACGTACCTTACCTAGTGAACTCTGACAGCCTATTCGGTACTGGTCAGCTTCCTA AGTTCGGTAAAGATCTTTTCCACACTGAGCCTCTAGCGGAAAAAGTAAACGACGAAGAGCCACGTAAACTGTCTCTAATC CCTACAGCAGAAGTACCAGTAACGAACCTAGTTCGTGACACTATCACTGACGAAGCGGATCTACCTATCAAGATGACAGC CCACACGCCATGTTTCCGTTCAGAAGCGGGTTCATACGGTCGTGATACTCGTGGTCTGATTCGTATGCACCAGTTCGACA AAGTTGAGCTAGTACAAATCACGAAGCCAGAAGATTCAATGACCGCGCTAGAAGAGCTAACAGGTCACGCTGAGAAAGTT CTACAACTTCTTGAACTTCCTTACCGTAAAGTCGTTCTATGTACAGGCGACATGGGCTTCGGCGCTCGTAAAACTTACGA CCTAGAAGTTTGGGTTCCTGCTCAAGAGACTTACCGTGAAATCTCTTCATGTTCTAACATGTGGGACTTCCAAGCTCGTC GTATGCAAGCGCGTTTCCGTCGTAAAGGCGAGAAGAAACCTGAGCTTGTGCACACGCTAAACGGTTCTGGTCTAGCAGTT GGTCGTACCATGGTTGCTATCCTAGAAAACAACCAAGAAGCAGACGGTCGCATTGCAATCCCTGCAGTACTTCAGAAGTA CATGGGCGGCGCAACGCACATCGGTTAA Protein sequence : MLDSKLLRTELDETAAKLARRGFKLDVETIRKLEEQRKSIQVEVENLQSTRNSISKQIGQKMAAGDKEGAEEIKKQIGTL GSDLDAKKVELEQVMAQLDEFTLSVPNIPADEVPDGKDENDNVEISRWGEPKTYDFDLKDHVDLGEMGGGLDFASAVKIT GARFIVMKGQFARLHRAIAQFMLDLHTEEHGYTEMYVPYLVNSDSLFGTGQLPKFGKDLFHTEPLAEKVNDEEPRKLSLI PTAEVPVTNLVRDTITDEADLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQITKPEDSMTALEELTGHAEKV LQLLELPYRKVVLCTGDMGFGARKTYDLEVWVPAQETYREISSCSNMWDFQARRMQARFRRKGEKKPELVHTLNGSGLAV GRTMVAILENNQEADGRIAIPAVLQKYMGGATHIG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 2e-97 | 56 |
