Gene Information

Name : pilD (PSPTO_0924)
Accession : NP_790763.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : type IV pilus prepilin peptidase PilD
Function : -
COG functional category : N : Cell motility
COG ID : COG1989
EC number : -
Position : 1003193 - 1004065 bp
Length : 873 bp
Strand : -
Note : see PMID:20190049 for expression data

DNA sequence : 
ATGCCCCTCCTCGACCTCTTGGCCAGCTCTCCCCTGGCCTTCGTCACCACCTGCTGCCTACTTGGCCTGATCGTCGGAAG
CTTCCTCAACGTGGTCGTCTACCGCCTCCCAAAAATGATGGAGCGCGACTGGAAAGTACAATCACGGGAAATGCTAGGCC
TCCCTGCCGAACCGGACCAACCCGTCTTCAACCTGATCCTGCCGCACTCAAGCTGCCCGCACTGCGCGCACAAGATCCGC
CCGTGGGAAAACCTGCCGGTCATCAGTTACCTGTTGCTGCGCGGCAAATGCTCGCAATGCAAAGCCCCCATCAGCAAGCG
CTACCCAGTGGTGGAGCTGACCTGCGCAGTGTTGTCGGCCTACGTCGCCTGGCATTTCGGCTTCGGCTGGCAGGCGGCTG
CGATGCTGGTGTTGAGCTGGGGTTTGCTGGCGATGAGTCTGATCGATGCCGATCATCAGCTGTTACCTGACTCTTTGGTG
CTGCCACTGCTGTGGCTGGGCCTGATCGTTAACGCCTTTGGGCTGTTCACCTCGCTGAGCGACGCGCTGTGGGGTGCAGT
GGCCGGTTATCTGACGCTGTGGTCGGTGTTCTGGCTTTTCAAGTTGGTGACGGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAATTGCTGGCCATGCTTGGCGCGTGGGGTGGCTGGCAGATTCTGCCGTTGACCATTCTGTTGTCGTCGCTGGTGGGT
GCGGTACTTGGGGTGATCATGATGCGCGTGCGCAGGGTCGAAAGTGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTATATGCAGTTTGCCGGTTTCAGATGA

Protein sequence : 
MPLLDLLASSPLAFVTTCCLLGLIVGSFLNVVVYRLPKMMERDWKVQSREMLGLPAEPDQPVFNLILPHSSCPHCAHKIR
PWENLPVISYLLLRGKCSQCKAPISKRYPVVELTCAVLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLSDALWGAVAGYLTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAE85237.1 putative prepilin peptidase A Not tested PAI V 536 Protein 4e-20 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilD NP_790763.1 type IV pilus prepilin peptidase PilD VFG0114 Protein 2e-92 80
pilD NP_790763.1 type IV pilus prepilin peptidase PilD VFG0234 Protein 2e-45 53
pilD NP_790763.1 type IV pilus prepilin peptidase PilD VFG2428 Protein 3e-41 51
pilD NP_790763.1 type IV pilus prepilin peptidase PilD VFG1882 Protein 1e-49 50