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Name : hopD1 (PSPTO_0876) Accession : NP_790715.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Unknown Product : type III effector HopD1 Function : - COG functional category : - COG ID : - EC number : - Position : 946222 - 948339 bp Length : 2118 bp Strand : + Note : previously known as HopPtoD1 (PMID 12032338; Petnicki-Ocwieja et al, 2002); see PMID:20190049 for expression data; similar to GP:14905934; identified by sequence similarity; putative DNA sequence : ATGAATCCTCTACGATCTATTCAACACAACATTGCAACTCCCCCAATCAGTGGCGGTCAGCCATTAGACGCGGTGGGCCC TCAGGCCCAGCAATCCCATCCTAAAAGGATTTCACCTTCTCAATTGAGCCAAAGCGCTCACCAGGCTCTAGAACGCCTTT CAGCTAATGCCGAACACCAACGCCTTGCATCACTGGTACGCAACGCTCTGCAGGATGGCACATTTCAATTTCAATCCAGT AACCACACGCAAGTAACCTATAAAGCGTCAATCTGTCTGCCAGCTGACACCGATACCGTGAGAACCGACCACTTGATTAA TAACGAGCTGACGGTTCAGGCCCGATTAAATGATCAATCGGAGTACGACATCGTCAGCGCACATTTGCATGGCTCTTCGA AAGCCATATCCTTCGACGTACCCAGCCCCCCGCCCGCACATGGTTCAGCATCTTCTGTCTTGAGTGAACGGACCCATCTA GGTATGAGTCGCGTTCTCTCACAAGATGCAGTAGACAGCAGTAGCCTGGAAACTCCGTTACTGAGCTCGCCAGACCATTC TCGTCCGCCATCACAGCCAAAGCCCGTGCATATCGGGTCGGTCCGCAGGGACTCTGGTAGCCTTGTTTCCGATAACCCGG TAGTGCAGGCCCTGCTATCGTTTGCGCAGGCCGACCAGGCATTTCCACCACAGGCCGCGAGCATTGCCGGGGTCCAGCTG GAAATGCGGCCACGTCGGGATATTGAGAAAGCACTTGAGGAATTCAAAGGCGCCTTCACGGTGGTGAAGGCGCAACTGAT GTCCGGTGCCAACTCGTCGGAGCGTGTAGATGAGGATGTCAACGCAGACATCCATATCCCCTTATTGCTCAAGGCCATCG AGCGGGGGGCTGCGGCATTTGGTCCAAACGCATCAATCGGCCAGAATAGCGCGAAAGCGTTTCTCGCCTCATGTGCTCCC AAGATCACGTCCAATGACGATGTCCTCTCCGAGTTCATCAACCAGAAACTCAAGGGGGACGACGATCTTCAGGTTCGCCT GGGCGCACAGGAATTGTTGCATGTAGCCACCAAGAAGGAATTCCAGCTCGGCGGTCTAGCCGGCAGCATCGGGGTCAGCA GCATACTCGGCTCGGCATGGGAGCTTGGCGCTTCTGAGCTGTTGAAAAATGCCATCTTCGGCAAAAATTTCTCACCGAGC CAATATGCCCTGCAATTGGCTGGAATCGATTCAGTGCCTCCTTTGATTATCGAGTCCATGGACACCATGTGCGTACTTGC CATCATCAAGGGCATGAAGGGTGAGGAGTGGTCCATGAGCGATCTACTTCCCAAGGCGTTGAAGGCCGGTGCTATTTCCT CGGTGGTGTCATTCCCCAATAATGTTTTGCAGTATGCAGGTTTCAAATCCAGAGTCGGCGATCTTGCGGCAAACTCAGTG ACAACTGAAGCGGCCATCTTTGGCGCCGCCTCCGGTATTCCACCCGAGGTCAAGGAAAGTGAAGAGCTGATGCGTGCTGG CTTATTCCAGAGCATGAAGGACGGCGTGATGGCTCATTCAGGCGAGGGGGTGGACACCAAAAAAACGATTGAGCGGATGA CGCGCCATGCGCTGGATATCGCTCCGGGCGAAAGCACCGCTGTCAAGTCCATGGGGCTGGCATCGATTGTCGGGATGATT CCACTGATTGCCAGCAACAAGGCAACCGGGCTGCTGTCGGAACAGGTACTGCGTATTTTCCGGAGCGCCGTCTTCAATCC AATCGAAGCCATCGCTCTGAACGCGTTGGCGCTTGGCGGGCGTGTCAACGTTCCCGGGCTATTTGATTCCGACAATGCCA AGCATGCACGCGTGGTACAAACCATCCTTGCGCGGGCCAGCCAGCACATGGAAGCTGGAGACCGTGACATTTCCGCAGAG GAGCTACATCAAATGCTGGCTCCCCGGAGCGAGTTCCTGCGCCATGTGGGATCTGCGATTGTCAACGGCATGAATGCCAG CTTTGAGGCAATTCCCGCCCTGGTTCGGAAGCTTGGATATGGTGAGGCTCCATTGGCCGAACGTATTCCGTATCAAGACC TGGCTGTGCCCGACACGTCGCGGCAGCCCGCACCCTGA Protein sequence : MNPLRSIQHNIATPPISGGQPLDAVGPQAQQSHPKRISPSQLSQSAHQALERLSANAEHQRLASLVRNALQDGTFQFQSS NHTQVTYKASICLPADTDTVRTDHLINNELTVQARLNDQSEYDIVSAHLHGSSKAISFDVPSPPPAHGSASSVLSERTHL GMSRVLSQDAVDSSSLETPLLSSPDHSRPPSQPKPVHIGSVRRDSGSLVSDNPVVQALLSFAQADQAFPPQAASIAGVQL EMRPRRDIEKALEEFKGAFTVVKAQLMSGANSSERVDEDVNADIHIPLLLKAIERGAAAFGPNASIGQNSAKAFLASCAP KITSNDDVLSEFINQKLKGDDDLQVRLGAQELLHVATKKEFQLGGLAGSIGVSSILGSAWELGASELLKNAIFGKNFSPS QYALQLAGIDSVPPLIIESMDTMCVLAIIKGMKGEEWSMSDLLPKALKAGAISSVVSFPNNVLQYAGFKSRVGDLAANSV TTEAAIFGAASGIPPEVKESEELMRAGLFQSMKDGVMAHSGEGVDTKKTIERMTRHALDIAPGESTAVKSMGLASIVGMI PLIASNKATGLLSEQVLRIFRSAVFNPIEAIALNALALGGRVNVPGLFDSDNAKHARVVQTILARASQHMEAGDRDISAE ELHQMLAPRSEFLRHVGSAIVNGMNASFEAIPALVRKLGYGEAPLAERIPYQDLAVPDTSRQPAP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| avrPphD1 | AAO33448.1 | AvrPphD1 | Not tested | Not named | Protein | 0.0 | 95 |
