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Name : clpB (PSPTO_0829) Accession : NP_790675.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Virulence Product : clpB protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 895919 - 898483 bp Length : 2565 bp Strand : + Note : see PMID:20190049 for expression data DNA sequence : ATGCGTATCGACAGATTGACCAGTAAATTACAGTTAGCGTTATCGGATTCCCAGTCGCTGGCCGTCGGCCTCGACCATCC CGCCATCGAGCCTGCGCATTTGATGCAGGCACTGCTCGAACAGCAGGGCGGTTCCATCAAGCCATTGCTGCTGCAAGTCG GCTTCGATATCAACAGCCTGCGCAAGGAACTGAGCGCTGAGCTGGACCGACTGCCCAAAATCCAGAACCCGACCGGCGAC GTGAATATGTCGCAGGACCTGGCGCGCCTGCTCAATCAGGCCGACCGCCTGGCGCAGCAGAAGGGCGATCAGTTCATTTC CAGCGAGCTGGTGCTGCTCGCTGCAATGGATGAGAACAGCAAGCTCGGCAAGTTGTTGCTGGGGCAGGGCGTCAGCAAGA AGGCCCTGGAAAATGCCATCAATAACCTGCGCGGCGAAGGTGCCGTCAATGACCCGAACATCGAAGAGTCGCGTCAGGCG CTCGACAAGTACACCGTTGACCTGACCAAGCGCGCCGAAGAGGGCAAGCTAGACCCGGTGATTGGCCGTGATGACGAGAT CCGTCGCACCATTCAGGTTCTGCAACGCCGAACCAAAAACAATCCGGTGCTGATCGGTGAGCCCGGTGTGGGTAAAACCG CCATCGCCGAAGGTCTGGCGCAGCGCATCATCAATGGCGAGGTGCCGGATGGCCTGCGCGGCAAGCGTCTGCTGTCGCTG GACATGGGCGCACTGATTGCCGGTGCCAAGTACCGTGGCGAGTTCGAAGAGCGCTTGAAGTCGCTGCTCAACGAGCTGTC CAAGCAGGAAGGCCAGATCATCCTGTTCATCGACGAATTACACACCATGGTCGGCGCGGGCAAGGGCGAGGGCTCGATGG ACGCGGGCAACATGCTCAAGCCGGCACTGGCTCGGGGCGAGTTGCACTGCGTCGGCGCCACCACGCTCAACGAGTACCGC CAATATATCGAGAAGGACGCCGCGCTTGAGCGTCGTTTCCAGAAAGTGCTGGTGGACGAGCCGAGCGAAGAGGACACCAT TGCAATTCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCATCACAAGGTTGCGATCACCGACGGCGCGATCATCGCTGCGG CCAAGCTGAGCCATCGCTACATCACCGATCGTCAGTTGCCGGACAAGGCCATTGACCTGATTGACGAAGCGGCCAGCCGC ATTCGCATGGAGATCGACTCCAAGCCCGAAGTGCTCGACCGTCTTGAGCGACGTCTGATTCAGCTGAAAGTCGAAGCTCA GGCGCTCAAGAAGGAAAAGGACGAGGCAGCCATCAAACGCCTGGAAAAACTCCAGGAAGAAATCGTGCGCCTTGAGAAGG AATACGCCGATCTCGAAGAAATCTGGACTTCGGAAAAAGCCGAAGTCACCGGTTCTGCGCAGATCCAGCAGAAAATAGAG CAGTCCCGTCAGGAACTGGAAGCGGCGCGTCGCCGTGGCGACCTGAACCGCATGGCCGAGTTGCAGTACGGCATCATCCC GGACCTGGAACGCAGCCTGCAAATGGTCGATCAGCACGGCAAGCCCGAGAACCAGTTGCTGCGCAGCAAAGTGACCGAAG AAGAAATTGCCGAAGTCGTCTCCAAATGGACCGGTATTCCTGTGTCGAAGATGCTGGAGGGCGAGCGCGAGAAGCTGTTG CGCATGGAAACCCTGCTGCATAACCGGGTGATCGGTCAGGAAGAGGCGGTAGTGGCGGTTTCCAACGCCGTGCGGCGCTC GCGTGCCGGGTTGTCCGACCCTAATCGCCCAAGCGGCTCGTTCATGTTCCTCGGCCCCACCGGCGTGGGTAAAACCGAAC TGTGCAAGGCGCTGGCCGAATTTCTGTTCGACACCGAAGAGGCGATGGTGCGAATCGACATGTCCGAGTTCATGGAGAAA CATTCCGTGGCTCGCCTGATCGGTGCACCACCCGGCTATGTCGGTTACGAAGAGGGCGGCTACCTGACCGAAGCCGTGCG TCGCAAGCCGTACTCGGTGATCCTGCTCGATGAGGTGGAGAAGGCGCACTCCGATGTCTTCAACATCCTGCTGCAGGTGC TTGAAGACGGACGCCTGACCGACAGCCACGGGCGGACAGTGGATTTCCGTAATACCGTGATCGTCATGACCTCCAACCTG GGCTCGGCGCAGATCCAGGAACTGGTGGGTGATCGCGAGGCGCAGCGTGCGGCGGTAATGGACGCAGTCAGCACGCACTT CCGTCCGGAGTTCGTCAACCGGATCGACGAGGTGGTGATCTTCGAGCCCTTGGCGCGTGATCAGATTGCCGGTATCACCG ATATCCAGCTTGGCCGTCTGCGCAAGCGTCTGGCCGAGCGCGAGCTGACAATGGTGCTGAGCCCCGAGGCGCTCGACAAG CTGATTGCCGTCGGTTACGACCCGGTCTATGGCGCACGGCCACTCAAGCGCGCCATTCAGCGCTGGATCGAAAACCCGCT GGCGCAACTGATCCTCTCGGGTGGCTTCGAGCCGGGCAGCAGCATCACCGGCAAGGTGGTCGACGACGAGATCGTGTTTG GCTGA Protein sequence : MRIDRLTSKLQLALSDSQSLAVGLDHPAIEPAHLMQALLEQQGGSIKPLLLQVGFDINSLRKELSAELDRLPKIQNPTGD VNMSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDENSKLGKLLLGQGVSKKALENAINNLRGEGAVNDPNIEESRQA LDKYTVDLTKRAEEGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGEVPDGLRGKRLLSL DMGALIAGAKYRGEFEERLKSLLNELSKQEGQIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYR QYIEKDAALERRFQKVLVDEPSEEDTIAILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASR IRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQEEIVRLEKEYADLEEIWTSEKAEVTGSAQIQQKIE QSRQELEAARRRGDLNRMAELQYGIIPDLERSLQMVDQHGKPENQLLRSKVTEEEIAEVVSKWTGIPVSKMLEGEREKLL RMETLLHNRVIGQEEAVVAVSNAVRRSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEK HSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHSDVFNILLQVLEDGRLTDSHGRTVDFRNTVIVMTSNL GSAQIQELVGDREAQRAAVMDAVSTHFRPEFVNRIDEVVIFEPLARDQIAGITDIQLGRLRKRLAERELTMVLSPEALDK LIAVGYDPVYGARPLKRAIQRWIENPLAQLILSGGFEPGSSITGKVVDDEIVFG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 5e-156 | 45 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-104 | 42 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 4e-102 | 41 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 5e-102 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_790675.1 | clpB protein | VFG2076 | Protein | 9e-107 | 43 |
