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Name : PSPTO_5425 (PSPTO_5425) Accession : NP_795152.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Virulence Product : clpB protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 6166575 - 6169223 bp Length : 2649 bp Strand : - Note : see PMID:20190049 for expression data DNA sequence : ATGAGCAATGTAGACCTGCAACAACTTATTCAAGCGCTGGACGCCGAAACCCGTCGTGATCTGGAAAGCTCCGCGGAGCG CTGCGTAGCCCGGGGCGGTAGCAAGATTCTGGTTGAAGATCTGTTGCTGGAGCTGCTGGAGCGTCCGCAAGGTCTGCTCG CGCGTGCCCTGCAGGATGCTGAAGTGGACGCTGGTGAATTGAGTGCCTCTCTGCAATCGCGGGTCGAGCACAGCGCTTCA CGCAACCCGGTGTTTGCTCCGGAACTGGTGCAATGGCTGCAGGATGCCTTGCTGGTGGCCAACCTTGAACTGGGTCAGAC CCAGGTCGAACAGGCCGCGCTGATCCTCGCACTACTGCGCAACCCGATGCGCTACGCCGGTAGCCGCTATCAGCCTTTGC TGGCCAAACTGAATATTGATCGGCTGAAAGAGTTTGCTCTGTCCAAGCAAGAGCAGCCTGCCAACGGCAAATCGGCTGCT CAGGGCGAATCGCTGTTGGAGCGTTTCACTCACAACCTGACCCAGCAGGCCCGCGACGGCAAGCTTGATCCGGTACTGTG CCGCGATGGCGCGATTCGGCAAATGGTCGACATCCTGGCTCGGCGCCGCAAGAACAATCCGATTGTGGTCGGCGAAGCCG GTGTCGGTAAAACCGCCATCGTTGAAGGTCTCGCATCCCGAATTGCTGCGGGTGAAGTGCCGCAGGCGCTCAAGGGCGTC GAGCTGCTGTCGCTGGACATGGGGCTGCTGCAGGCTGGCGCCAGCGTAAAGGGTGAGTTCGAGCGTCGCCTCAAAGGTGT GATCGACGAAGTCAAAGCGTCGCCTAAGCCGATCATTCTGTTCATCGATGAAGCCCACACGCTTATCGGTGCTGGCGGCA ACGCTGGTGGTTCCGATGCCGCCAACCTGCTCAAGCCGGCTCTGGCGCGTGGCGAGTTGCGCACCATCGCTGCCACGACG TGGGCTGAGTACAAGAAGTACTTTGAAAAAGACCCGGCTCTGGCGCGTCGCTTCCAGCCTGTTCAACTGCATGAACCGAC CGTAAGCGAAGCCGTGACCATCCTGCGTGGTCTGGCACAAGTCTATGAGAAGAGCCATGGCATTTACTTGCGCGACGACG CTGTGGTTGCTGCCGCCGAGCTGTCTGCCCGCTATCTGGCTGGCCGCCAGCTTCCTGACAAAGCAGTCGATGTTCTCGAT ACGGCGTGCGCGCGCGTGCGTATCAGCCTGGCTGCCGCGCCGGAGAGTCTGGAGCGCCTGCGTGGCGAGCTGGCTGAAGG TGGTCGCCAGCGTCAGGCATTGCGTCGCGACGCTGAAGCCGGTCTGCTGATTGACCACGAGTCGCTGGAAGCTCTGGAAA CGCGTCTGCACGCAGCTGAAGAGGAAAGGGTTGCACTGGAAGCAATGTGGCTCGAACAGAAAACATTGGCCGAACGCTTG CTGGAACTGCGTCAGCAACTGGCCAAGGCGCGTGAAGCGGTAGCTGCCGTGCCAGTCGTTGAAATCGGAGAGGACGACGA GGGCACGGTCATCGAAGCCGTTGCGCTGGATGAAACGCAGAGCGTAGAGGCGCTGACAGCAGCCCTGAACGATACCCATG TCGCCCTGGCCGCACTGCAGGTCAAGGAGCGACTGGTGAGCTTCGAGGTCTGTCCGCGTCTTGTGGCTGAGGTGATCAGC GCCTGGACCGGTGTCCCGCTGGCGCAACTGGCTCGTGAGCACAACGCCAAGGTTGCCAGTTTCGCCAAGGACCTTCGTAT TCGCATCCGTGGTCAAGAGCAGGCCGTTCATGCCCTTGATCGCTCCATGCGCGCTACTGCCGCTGGCTTGAACAAACCCG ATGCGCCGGTAGGCGTGTTTCTGCTTGTGGGGCCGAGCGGCGTTGGCAAGACTGAAACGGCGCTGGCGCTCGCTGATCTG TTGTACGGAGGTGATCGTTTTATCACCACCATCAACATGTCCGAGTTTCAGGAGAAGCATACGGTTTCGCGCCTGATCGG TGCGCCGCCAGGTTACGTCGGTTATGGCGAAGGCGGCATGCTCACCGAAGCTGTACGTCAGAAGCCGTATTCGGTCGTGC TGCTTGATGAAGTCGAGAAAGCCGACCCTGATGTGCTCAACCTGTTCTATCAGATCTTCGACAAAGGTGTGGCCAACGAC GGCGAGGGACGCGAGATCGACTTCCGCAATACGCTGATTCTGATGACATCGAACCTTGGCAGCGACCAGATCAGCGCACT GTGCGAAGACGGCGCGCGGCCAACCGCCGAAGTGCTTGAGGAGACCATCCGGCCGGTCCTCAGCAAACACTTCAAGCCAG CGTTACTGGCACGTATGCGCGTAGTGCCGTACTACCCGGTCAGCGGGCCGGTGCTACGCGAGCTGATCGAAATCAAACTC GGTCGCCTGGGCGAGCGCCTGAACCGTCGTCAGCTGGAATTCACTTACTGTCAGGACCTCGTTGATCACTTGGCGCAGCG TTGCACTCAAAGCGACAGCGGTGCGCGTCTGATCGACCATCTGCTGGACCTTCATGTCCTGCCGCTGGTAGCTGACCGCC TGCTCGATGCTATGGCTACCGGAGAAAGTCTGAAGCGTGTTCATGCCACGCTGGACACTTCCGGCACCGTGACGTGTGAG TTTGCCTGA Protein sequence : MSNVDLQQLIQALDAETRRDLESSAERCVARGGSKILVEDLLLELLERPQGLLARALQDAEVDAGELSASLQSRVEHSAS RNPVFAPELVQWLQDALLVANLELGQTQVEQAALILALLRNPMRYAGSRYQPLLAKLNIDRLKEFALSKQEQPANGKSAA QGESLLERFTHNLTQQARDGKLDPVLCRDGAIRQMVDILARRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPQALKGV ELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSDAANLLKPALARGELRTIAATT WAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLAQVYEKSHGIYLRDDAVVAAAELSARYLAGRQLPDKAVDVLD TACARVRISLAAAPESLERLRGELAEGGRQRQALRRDAEAGLLIDHESLEALETRLHAAEEERVALEAMWLEQKTLAERL LELRQQLAKAREAVAAVPVVEIGEDDEGTVIEAVALDETQSVEALTAALNDTHVALAALQVKERLVSFEVCPRLVAEVIS AWTGVPLAQLAREHNAKVASFAKDLRIRIRGQEQAVHALDRSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALALADL LYGGDRFITTINMSEFQEKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVVLLDEVEKADPDVLNLFYQIFDKGVAND GEGREIDFRNTLILMTSNLGSDQISALCEDGARPTAEVLEETIRPVLSKHFKPALLARMRVVPYYPVSGPVLRELIEIKL GRLGERLNRRQLEFTYCQDLVDHLAQRCTQSDSGARLIDHLLDLHVLPLVADRLLDAMATGESLKRVHATLDTSGTVTCE FA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 7e-155 | 47 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 5e-155 | 47 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 4e-126 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PSPTO_5425 | NP_795152.1 | clpB protein | VFG2076 | Protein | 1e-154 | 49 |
| PSPTO_5425 | NP_795152.1 | clpB protein | VFG2084 | Protein | 3e-156 | 48 |
