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Name : hopA1 (PSPTO_5354) Accession : NP_795084.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Virulence Product : type III effector HopA1 Function : - COG functional category : - COG ID : - EC number : - Position : 6086243 - 6087385 bp Length : 1143 bp Strand : + Note : previously known as HrmA (PMID 8274770; Heu and Hutcheson, 1993) and HopPsyA (PMID 11854524; Fouts et al, 2002); see PMID:20190049 for expression data; similar to SP:Q08370, GB:L05500, SP:Q08828, and PID:349269; identified by sequence similarity; putative DNA sequence : ATGAACCCCATTCAGTCACGCTTCTCCAGTGTGCAAGAGCTCAGACGATCCAACGTTGATATTCCGGCGCTCAAAGCCAA TGGCCAACTGGAGGTCGACGGCAAGAGGTACGAGATTCGTGCAGCCGATGACGGAACAATTTCGGTCCTTCGACCGGAGC AACAATCCAAAGCGAAAAGTTTTTTCAAGGGCGCTTCCCAGTTGATAGGTGGCAGCAGCCAGCGCGCGCAGATTGCCCAG GCGCTCAACGAGAAGGTCGCATCGGCACGCACTGTCTTGCACCAGAGCGCTATGACGGGCGGACGCTTGGACACCCTTGA GCGGGGCGAAAGCAGCTCAGCCACAACAGCCATCAAACCCACTGCCAAACAGGCTGCGCAAAGTACTTTTAACAGCTTTC ATGAGTGGGCCAAACAGGCAGAGGCGATGCGAAACCCGTCTCGAATGGATATCTACAAGATCTATAAACAAGATGCACCT CACTCACACCCCATGAGCGACGAGCAGCAAGAAGAGTTCCTGCACACGCTAAAGGCATTGAATGGCAAAAACGGCATTGA GGTGCGCACTCAGGACCACGACAGCGTCAGAAATAAAAAAGACCGCAACCTGGACAAGTACATCGCAGAGAGCCCGGATG CAAAGAGGTTTTTCTATCGAATTATCCCCAAACATGAGCGCCGAGAAGATAAGAATCAAGGGCGATTGACCATTGGCGTG CAACCCCAATATGCAACACAGTTGACCCGCGCCATGGCAACCCTGATAGGGAAGGAAAGTGCAATCACGCATGGCAAAGT AATAGGCCCCGCCTGCCACGGCCAAATGACCGATTCGGCAGTTTTGTATATCAACGGTGATGTTGCAAAGGCAGAAAAGC TGGGCGAGAAACTGAAACAGATGAGCGGCATTCCTCTGGATGCGTTCGTTGAGCACACCCCTTTGAGCATGCAATCCCTG AGTAAAGGTCTGTCCTATGCAGAAAGCATCCTGGGCGACACCAGAGGCCATGGGATGTCGCGAGCGGAAGTGATCAGCGA TGCCTTGAGGATGGACGGGATGCCATTTCTGGCCAGATTGAAGCTATCACTGTCTGCCAATGGCTATGACCCGGACAACC CGGCCCTTCGAAACACGAAATGA Protein sequence : MNPIQSRFSSVQELRRSNVDIPALKANGQLEVDGKRYEIRAADDGTISVLRPEQQSKAKSFFKGASQLIGGSSQRAQIAQ ALNEKVASARTVLHQSAMTGGRLDTLERGESSSATTAIKPTAKQAAQSTFNSFHEWAKQAEAMRNPSRMDIYKIYKQDAP HSHPMSDEQQEEFLHTLKALNGKNGIEVRTQDHDSVRNKKDRNLDKYIAESPDAKRFFYRIIPKHERREDKNQGRLTIGV QPQYATQLTRAMATLIGKESAITHGKVIGPACHGQMTDSAVLYINGDVAKAEKLGEKLKQMSGIPLDAFVEHTPLSMQSL SKGLSYAESILGDTRGHGMSRAEVISDALRMDGMPFLARLKLSLSANGYDPDNPALRNTK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hopA1 | AAF71481.2 | HopA1 | Virulence | Hrp PAI | Protein | 9e-104 | 57 |
