Gene Information

Name : PSPTO_5314 (PSPTO_5314)
Accession : NP_795045.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Resistance
Product : aliphatic sulfonates transport ATP-binding subunit
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1116
EC number : -
Position : 6042943 - 6043755 bp
Length : 813 bp
Strand : -
Note : see PMID:20190049 for expression data

DNA sequence : 
ATGACCAGTCTGAAACAACAACCCCCGCACCTGCTGCGCGGTATCCCGCTGGCGGTGCAAAACCTGAAAAAAGCGTTTGG
CACCCGCGAAGTGCTCAAGGACATCGACCTGCACATTCCGGCCGGTCAGTTCGTCGCCATTGTCGGCCGTAGTGGTTGCG
GTAAAAGCACCCTGCTGCGCCTGCTTGCCGGTCTCGACAAGCCAACCGAGGGCCAGTTGCTCGCAGGTTCTGCGCCGCTG
GACGATGCCCGCGAAGACACGCGCTTGATGTTCCAGGAGGCGCGCTTGCTGCCCTGGAAGAAGGTCATCGACAACGTCGG
TCTGGGCCTCGGTGGCAACTGGCGACCGCAGGCACTCGAAGCGCTTGAGGCCGTCGGGTTGGCTGAACGTGCCAACGAGT
GGCCGGCGGCATTGTCCGGTGGCCAGAAGCAGCGTGTTGCACTGGCTCGCGCGCTGATTCACAAGCCGCGGCTGCTGTTG
CTCGACGAACCACTGGGCGCGCTGGACGCCCTGACCCGGATCGAAATGCAACAACTGATTGAAAAGCTGTGGGGCCAGTA
TGGCTTCACGGTGCTGCTGGTCACCCACGATGTCAGCGAAGCGGTCGCCATTGCCGACCGCGTGATTCTGATCGAAGAAG
GCCAGATCGGCCTCGATCTGCTGGTCGATCTGCCACGCCCGCGAGCTCGCGGCTCACATCGCCTCGCCGCTCTGGAAGCA
GAAGTGCTTAACCGCGTGCTGGCCATCCCCGGCTCGCCACCTGACCCGGAACCGTTTTCGCCACTGCCCACGCAACTGAG
CTGGGCAAATTAA

Protein sequence : 
MTSLKQQPPHLLRGIPLAVQNLKKAFGTREVLKDIDLHIPAGQFVAIVGRSGCGKSTLLRLLAGLDKPTEGQLLAGSAPL
DDAREDTRLMFQEARLLPWKKVIDNVGLGLGGNWRPQALEALEAVGLAERANEWPAALSGGQKQRVALARALIHKPRLLL
LDEPLGALDALTRIEMQQLIEKLWGQYGFTVLLVTHDVSEAVAIADRVILIEEGQIGLDLLVDLPRPRARGSHRLAALEA
EVLNRVLAIPGSPPDPEPFSPLPTQLSWAN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 4e-32 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-17 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-17 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-17 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-15 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPTO_5314 NP_795045.1 aliphatic sulfonates transport ATP-binding subunit NC_012469.1.7686878. Protein 5e-16 42