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Name : PSPTO_5217 (PSPTO_5217) Accession : NP_794948.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Virulence Product : sigma-54-binding protein Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2204 EC number : - Position : 5939068 - 5940018 bp Length : 951 bp Strand : - Note : see PMID:20190049 for expression data DNA sequence : ATGAGCCTTCACGAAAATTTCGGCCAGCCGCTGCTGACCTTTCCCGATGCGGAAAAAAGCCCACTCAGCATTCGCGCCAA GGCGCTGGTGTTCATCGACCCACGCTCCCGCCGCTTGCGTGAGGAAATGGAGCAACTGGCCCCACGTGAGCTGCCGGTGC TGATCCGCGGTGAATCAGGGACCGGCAAGGAGCTGCTGGCACGGCACATTCATCGCGGCAGTGATCGCTCCGGCCTGTTC GTTTCGGTGAACTGCGGCGCCATCAGCCCGACCTACGCCGATGCCGAGCTGTTCGGTTACGCCGCCGGGGCGCACAGCGG CTCGGTCAGCAGCCGCGCAGGCTGGTTCGGTTCTGCCAATGGTGGCACTTTGTATCTGGACGAGATCGGCGACTTGCCGT TGCCGATTCAGGTCAAGCTGCTCGCCGCGCTGGAAAATCACGAAGTCACCCGAGTCGGCGCGCACCAGCCCAGCCCGGTC GATGTGCGCCTGGTCGCGGCCACCAGCATCGATCTGGCGCAGGCGGTAGCCGCCGGAAAATTCCACGAGCGGCTCTATCA TTACCTCAGCGAAGGGAAGCTCGACCTGCCCGCATTGCGCGAACAGCCGGGCAATATCCTGCCATTGGCCGAATATTTTG TCGGCATCTACAGTCAGCGCCTGAGCCTGCCCGTGCAGTTGATCAGCGAAGACGCGCAACGCACGCTGGAAGCCCATAGC TGGCCCGGCAACACTCGCGAACTGGAGAACGTCATTCACTTTGCATTGCTGGTCAGCAGCGGCGACGAGATTCGGGCTGA AGACATCAACCTGCCCGACATCGCCACCCCGCTGACGCTGATCGAGCGCCAGGCAAAGCTGTTGGTCAGCAGCGGAGATC GCGAGCAGCTTTCTGCGCTGCGGCAATTGCTGGAGTCGGTGACGTCGCAGCTTGAGCAGAGCCCTGCGTGA Protein sequence : MSLHENFGQPLLTFPDAEKSPLSIRAKALVFIDPRSRRLREEMEQLAPRELPVLIRGESGTGKELLARHIHRGSDRSGLF VSVNCGAISPTYADAELFGYAAGAHSGSVSSRAGWFGSANGGTLYLDEIGDLPLPIQVKLLAALENHEVTRVGAHQPSPV DVRLVAATSIDLAQAVAAGKFHERLYHYLSEGKLDLPALREQPGNILPLAEYFVGIYSQRLSLPVQLISEDAQRTLEAHS WPGNTRELENVIHFALLVSSGDEIRAEDINLPDIATPLTLIERQAKLLVSSGDREQLSALRQLLESVTSQLEQSPA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 1e-39 | 42 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 1e-39 | 42 |
