|
Name : thiC (PSPTO_4976) Accession : NP_794709.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Unknown Product : thiamin biosynthesis protein ThiC Function : - COG functional category : H : Coenzyme transport and metabolism COG ID : COG0422 EC number : - Position : 5646584 - 5648473 bp Length : 1890 bp Strand : - Note : see PMID:20190049 for expression data DNA sequence : ATGAGTACAAAACCAAAAAACGCAGCCCATTTGAGCGAGTCGGCACAAGTCGATTCCGGATCGGTACAGCCGTTTACCCG TTCGCAGAAAATCTACGTTCAGGGCTCACGCCCGGACATCCGCGTGCCGATGCGCGAAGTGACTCTGGATGTCACGCCGA CGGACTTTGGCGGCGAGATCAACGCGCCGGTTACCGTTTATGACACGTCAGGCCCGTACACCGACCCCAACGTGATCATC GATGTGCGCAAAGGCCTGGCGGATGTTCGCTCGCCGTGGATCGACTCGCGCAATGACACCGAGCGCCTGCCGGGCTTGAG TTCCCACTTCGGCCAGCAGCGCCTGAGTGACGCCGAACTGACCGCGCTGCGCTTTGCCCATGTGCGCAATCCGCGTCGCG CCAAGGCGGGCGCCAACGTCAGTCAGATGCACTATGCGCGTCAGGGGATCATCACTGCCGAGATGGAATACGTTGCCATC CGCGAGAACATGAAACTTCAGGAAGCCCGCGCCGCAGGCCTGCTGACCCAGCAGCACGCCGGGCACAGCTTCGGGGCGAG CATTCCGAAGGAGATCACCGCCGAGTTCGTGCGCGAGGAAATCGCCCGGGGTCGAGCCATCATTCCGGCCAACATCAACC ATGTCGAGCTGGAACCGATGATCATCGGCCGTAACTTCCTGGTGAAGATCAACGGCAACATCGGCAACAGTGCGCTGGGT TCTTCCATCGAAGAAGAAGTCGCCAAACTGACCTGGGGCATTCGCTGGGGTTCGGACACGGTCATGGACCTGTCCACCGG CAAGCACATTCACGAAACCCGCGAATGGATCATCCGTAACTCGCCGGTGCCGATCGGTACGGTGCCGATCTATCAGGCGC TGGAAAAAGTCGGCGGCGCGGCCGAGGATCTGACCTGGGAGCTGTTCCGCGACACGTTGATCGAACAGGCCGAGCAGGGC GTCGATTACTTCACCATTCACGCCGGTGTGCTGCTGCGTTACGTACCGCTGACCGCCAAGCGCGTGACCGGGATTGTCAG CCGTGGTGGTTCGATCATGGCCAAGTGGTGCCTGGCGCATCACCAGGAAAACTTCCTGTACACCCATTTCGAAGACATCT GCGAAATCATGAAGGCCTACGACGTCAGCTTCTCGCTGGGCGATGGCTTGCGCCCCGGCTCGATTGCCGACGCCAACGAT GCGGCGCAGTTCGGTGAGCTGGAAACCCTCGGCGAACTGACCAAGATTGCCTGGAAACACGACTTGCAGACCATGATCGA AGGCCCAGGCCACGTGCCGATGCAGTTGATCAAAGAGAACATGGACAAGCAGCTGGAGTGCTGCGACGAAGCGCCGTTCT ACACCCTCGGCCCGCTGACCACTGATATTGCACCGGGTTATGACCACATCACCTCGGGCATCGGCGCGGCGATGATCGGC TGGTTCGGTTGCGCCATGCTGTGTTATGTCACACCCAAGGAACACCTGGGTTTGCCGAACAAGGATGACGTGAAGACCGG CATCATCACCTACAAGATCGCGGCCCACGCAGCGGACCTGGCCAAAGGGCATCCTGGCGCGCAGATTCGCGACAACGCGC TGAGCAAGGCGCGTTTCGAGTTCCGCTGGGAAGACCAGTTCAACCTCGGCCTGGACCCGGACACTGCGCGTTCATACCAC GATGAAACCCTGCCCAAGGACTCGGCCAAGGTCGCGCATTTCTGCTCCATGTGCGGGCCGAAATTCTGCTCGATGAAAAT CACCCAGGAAGTACGTGAATACGCCGCCAATCAGCGCATTGAAGCAGTGGATGTCGACGTCGCCAGGGGCCTTGCCGAAC AGGCCGAGCGCTTCAAGCAGGAAGGCAGCCAGTTGTACAAGAAGGTGTAG Protein sequence : MSTKPKNAAHLSESAQVDSGSVQPFTRSQKIYVQGSRPDIRVPMREVTLDVTPTDFGGEINAPVTVYDTSGPYTDPNVII DVRKGLADVRSPWIDSRNDTERLPGLSSHFGQQRLSDAELTALRFAHVRNPRRAKAGANVSQMHYARQGIITAEMEYVAI RENMKLQEARAAGLLTQQHAGHSFGASIPKEITAEFVREEIARGRAIIPANINHVELEPMIIGRNFLVKINGNIGNSALG SSIEEEVAKLTWGIRWGSDTVMDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEKVGGAAEDLTWELFRDTLIEQAEQG VDYFTIHAGVLLRYVPLTAKRVTGIVSRGGSIMAKWCLAHHQENFLYTHFEDICEIMKAYDVSFSLGDGLRPGSIADAND AAQFGELETLGELTKIAWKHDLQTMIEGPGHVPMQLIKENMDKQLECCDEAPFYTLGPLTTDIAPGYDHITSGIGAAMIG WFGCAMLCYVTPKEHLGLPNKDDVKTGIITYKIAAHAADLAKGHPGAQIRDNALSKARFEFRWEDQFNLGLDPDTARSYH DETLPKDSAKVAHFCSMCGPKFCSMKITQEVREYAANQRIEAVDVDVARGLAEQAERFKQEGSQLYKKV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00321 | YP_008211647.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR26 | Protein | 0.0 | 77 |
| BJAB07104_00317 | YP_008207782.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR25 | Protein | 0.0 | 77 |
| thiC | YP_001598318.1 | thiamine biosynthesis protein ThiC | Not tested | MDA | Protein | 0.0 | 72 |
