|
Name : PSPTO_4744 (PSPTO_4744) Accession : NP_794480.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Unknown Product : site-specific recombinase, phage integrase family Function : - COG functional category : - COG ID : - EC number : - Position : 5372875 - 5374362 bp Length : 1488 bp Strand : - Note : see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00589 DNA sequence : GTGGCTGCTTACGAAAACACAGATCATGAAGGGCGTTTAGTTCTCATCCCCCAAGTAATCGATGCTTTTGCTGATCTTTG CTTTGGCGATACACCTGAGGGTTCAATCCCTGTAACCATTTTTGGTGTTGGCAGGCAAATAAACGGCTTTCAGGTAAACG AGGCAATTGGCGATACTGCAGATAGAGCCATCTTCAACATGCCTTTTTTATTTCATCGCAATGGAGAACCTTGGAAAGAA GCAAATTCTTTTCTTCTCAGTCTTGTAAAAAACAAACATGTAAGCAGTCGTCCAGCAGACGAAGCAAGACGAAAGGCTAG TCGGTTACTCGACTATTTAATATTTACTGAGAATAATAATATCCATTGGATGGACTTCTCCGGGCGACGAATAGTTCATA GACCGACGTATAAGTATCATCTGTATTTATTCCAGCTCCTAGAGCGTGGGCCTGCTGTGGCCAATCAGTATACTAGTGTT GTTTATCAGTTTTATAAATTTGTTTCAATGCATTGGCACCCTATTGATATTGCCAGGGTTGATTCGGTTCGCGAGATAAA GGTAGCTATAGAAAATAAATATGGGTTCACCCGGCAAATCACCGTAGAGAAAAGAAGTCAAACGCAGAAGACTAACAAAG GTAAGGTGGTGCCGATTGGGTTGGTGGACGACGAAGGTGAATGCCTAAGGCCATTGACGAATCCGGAACTTTCAGATTTG CTATCCCTTTTCGATTCGGGGGGGTGGGATGCGCAAGAGCGTCTCATTATCCTGTTGCCCTTGCTGACCGGGTCACGAAA ACAAACTGTTCTAACGCTTCGAGTAAAACACGTTGAGGCGTTGATGCAGGGCTTGCGTACCCCTAAGGGTACGTACCTGT TGAAGGCTGGGCCTAGGACAGGGATTGATACTAAAGGCAACAAGCCTCAGACCCTACATGTCCCGGAGCAACTAGCCGAA GACTTGCTAACATATGTTAGAAGCGCCTATGCAAAAAACCGCAGGAAACGCTTTCAGTTGAACTATGCAACAGATTATCC TCATCTTAAAAGTATTCCAGACGAAGACATGTACGTGTTTTTGTCGGAGCAGGCTAACTGTTATTATATGGCTTCAAATG ACCCGCGTTTTCCATTCATTAAGACTAGGCCGCTAGGTGCCGTAGCCGATACTCTTAAGAAGAAAATAAAACGCTCTGTG TCGTCCAGTTTTCCCCGAGGTTTTACTTACCACTGGCTTCGCGCAACGTTTGCTTATCAACTTTATCAGCACTTGATTCC TCTCTTGAAGGATGGGCATCTGCTGTCTGGAGAGGATATCTCCATCATTCAGTCACGCATGCATCATGAGCGCCGCGAGA CCACTGAAAACTACTTAAAGCTCTTCAAAATGACGCCTGATAAGATTCGCGCCCAGGAAGATTATGAGGGTGTACTATTC AAAATGTCGTCCTATAGCGATTTGATTTTGGTTGATGATAATGCTTGA Protein sequence : MAAYENTDHEGRLVLIPQVIDAFADLCFGDTPEGSIPVTIFGVGRQINGFQVNEAIGDTADRAIFNMPFLFHRNGEPWKE ANSFLLSLVKNKHVSSRPADEARRKASRLLDYLIFTENNNIHWMDFSGRRIVHRPTYKYHLYLFQLLERGPAVANQYTSV VYQFYKFVSMHWHPIDIARVDSVREIKVAIENKYGFTRQITVEKRSQTQKTNKGKVVPIGLVDDEGECLRPLTNPELSDL LSLFDSGGWDAQERLIILLPLLTGSRKQTVLTLRVKHVEALMQGLRTPKGTYLLKAGPRTGIDTKGNKPQTLHVPEQLAE DLLTYVRSAYAKNRRKRFQLNYATDYPHLKSIPDEDMYVFLSEQANCYYMASNDPRFPFIKTRPLGAVADTLKKKIKRSV SSSFPRGFTYHWLRATFAYQLYQHLIPLLKDGHLLSGEDISIIQSRMHHERRETTENYLKLFKMTPDKIRAQEDYEGVLF KMSSYSDLILVDDNA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13510.1 | site-specific recombinase | Not tested | PAGI-7 | Protein | 5e-118 | 50 |
