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Name : PSPTO_4729 (PSPTO_4729) Accession : NP_794469.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Unknown Product : ISPsy4, transposition helper protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1484 EC number : - Position : 5356558 - 5357367 bp Length : 810 bp Strand : - Note : The annotation of this multicopy IS21 family element is based in part on an HMM match, the ISFinder database, and on positional information.; similar to GP:6009454, and GP:17865161; identified by sequence similarity; putative DNA sequence : ATGAACCTTCAACATGCTCGCCTGACAGAACTATGCAAGGGGCTAAAGCTTGAGCGCGTCGGGGTGGACTGGCCGCACCT GGCCCAACAAGCAGCAAGCGGCGAAGACAGCTTTGCCGACTTCCTCGAAAAGCTGCTGGCTGCCGAGACCGATGCCCGAA GTGAACGCTCTCGACAGGCCCTGCTGAAAACTGCCGCGCTGCCCGCTGTGAAAACGCTGGAGCAATACGACTTCGCGTTT GCCACCGGCGTCCCCCGGGCACAGCTCCAGGAGCTGGCAGCACTGAGTTTTGTTGGACGTGCCGAGAACATCGTGTTCCT GGGGCCTAGTGGTGTAGGCAAGAGCCACCTGGCTATCGCCCTGGCCTACCGGGCAGTGATGGCCGGTATCAAAACCCGCT TCGTCACGGCGGCTGACTTGATGCTGCAACTGACCGCTGCGCACCGCCAGGAACGGCTCAAGGAATACTTCAGTCGTGTG GTGATGGCCCCTGGGTTGTTGGTCATCGATGAAATCGGCTACCTGCCGTTTGGTCGTGATGAAGCCAACCTGTTCTTCAA TGTTGTCGCCAAGCGCTACGAGCAAGGCAGCCTGATCCTCACGAGTAACTTGCCGTTTACCCAGTGGGCCGGAACCTTTG CGGATGATCAAACACTGACAGCGGCCATGCTGGACAGGCTGTTACATCATGCCCATATCGTGCAGATGACAGGTGAAAGC TATCGACTCAAGGACAAGCGCAAAGCAGGAACCAAATCTTCTCGGGCCGAACCGGCTCGAAAATATGAACCCGAGGGGGG TCAAAACTAA Protein sequence : MNLQHARLTELCKGLKLERVGVDWPHLAQQAASGEDSFADFLEKLLAAETDARSERSRQALLKTAALPAVKTLEQYDFAF ATGVPRAQLQELAALSFVGRAENIVFLGPSGVGKSHLAIALAYRAVMAGIKTRFVTAADLMLQLTAAHRQERLKEYFSRV VMAPGLLVIDEIGYLPFGRDEANLFFNVVAKRYEQGSLILTSNLPFTQWAGTFADDQTLTAAMLDRLLHHAHIVQMTGES YRLKDKRKAGTKSSRAEPARKYEPEGGQN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api84 | CAF28558.1 | putative transposase | Not tested | YAPI | Protein | 9e-74 | 62 |
| y1093 | CAC43411.1 | IS100 transposase; transposase ORFA | Not tested | PAI III 536 | Protein | 9e-74 | 62 |
| unnamed | CAB46598.1 | IS100 transposase | Not tested | HPI | Protein | 9e-74 | 62 |
| s0036 | CAD33774.1 | ORF B protein | Not tested | PAI I 536 | Protein | 9e-74 | 62 |
| y1093 | CAD42087.1 | OrfB protein of IS100 transposase | Not tested | PAI II 536 | Protein | 9e-74 | 62 |
| YPTB1586 | YP_070114.1 | transposase/IS protein | Not tested | HPI | Protein | 1e-73 | 62 |
| orfB | CAE85183.1 | OrfB protein, transposase, IS100 | Not tested | PAI V 536 | Protein | 9e-74 | 62 |
| unnamed | CAA21402.1 | - | Not tested | HPI | Protein | 1e-73 | 62 |
| YPO1901 | YP_002346891.1 | transposase/IS protein | Not tested | HPI | Protein | 1e-73 | 62 |
| y2410 | NP_669717.1 | transposase/IS protein | Not tested | HPI | Protein | 1e-73 | 62 |
| aec58 | AAW51741.1 | Aec58 | Not tested | AGI-3 | Protein | 2e-73 | 62 |
| y1093 | CAD66188.1 | transposase Orf B, insertion element IS100 | Not tested | PAI III 536 | Protein | 8e-73 | 61 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PSPTO_4729 | NP_794469.1 | ISPsy4, transposition helper protein | VFG1515 | Protein | 5e-74 | 62 |
| PSPTO_4729 | NP_794469.1 | ISPsy4, transposition helper protein | VFG1627 | Protein | 5e-74 | 62 |
| PSPTO_4729 | NP_794469.1 | ISPsy4, transposition helper protein | VFG1606 | Protein | 5e-74 | 62 |
| PSPTO_4729 | NP_794469.1 | ISPsy4, transposition helper protein | VFG1663 | Protein | 5e-73 | 61 |
