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Name : hopAA1-2 (PSPTO_4718) Accession : NP_794461.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Virulence Product : type III effector HopAA1-2 Function : - COG functional category : - COG ID : - EC number : - Position : 5342748 - 5344211 bp Length : 1464 bp Strand : - Note : previously known as HopPtoA2 (PMID 12437299; Badel et al,2002); see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02987 DNA sequence : ATGCACATCAACCAATCCGCCCAACAACCGCCTGGCGTTGCAATGGAGAGTTTTCGGACAGCTTCCGACGCGTCCCTTGC TTCGAGTTCTGTGCGGTCTGTCAGCACTACCTCGTGCCGCGATCTACAAGCTATTACCGATTATCTGAAACATCACGTGT TCGCTGCGCACAGGTTTTCGGTAATAGGCTCACCGGATGAGCGTGATGCCGCTCTTGCACACAACGAGCAGATCGATGCG TTGGTAGAGACACGCGCCAACCGCCTGTACTCCGAAGGGGAGACCCCCGCAACCATCGCCGAAACATTCGCCAAGGCGGA AAAGTTCGACCGTTTGGCGACGACCGCATCAAGTGCTTTTGAGAACACGCCATTTGCCGCTGCCTCGGTGCTTCAGTACA TGCAGCCTGCGATCAACAAGGGCGATTGGCTAGCAACGCCGCTCAAGCCGCTGACCCCGCTCATTTCCGGAGCGCTGTCG GGAGCCATGGACCAGGTGGGCACCAAAATGATGGATCGTGCGAGGGGTGATCTGCATTACCTGAGCACTTCGCCGGACAA GTTGCATGATGCGATGGCCGTATCGGTGAAGCGCCACTCGCCTGCGCTTGGTCGACAGGTTGTGGACATGGGGATTGCAG TGCAGACGTTCTCGGCGCTAAATGTGGTGCGTACCGTATTGGCTCCAGCACTAGCGTCCAGACCGTCGGTGCAGGGTGCT GTTGATTTTGGCGTATCTACGGCGGGTGGCTTGGTTGCGAATGCAGGCTTTGGCGACCGCATGCTCAGTGTGCAATCGCG CGATCAACTGCGTGGGGGGGCATTCGTACTTGGCATGAAAGATAAAGAGCCCAAGGCCGCGTTGAGTGAAGAAACTGATT GGCTTGATGCTTACAAAGCGATCAAGTCGGCCAGCTACTCAGGTGCGGCGCTCAATGCGGGCAAGCGGATGGCCGGCCTG CCACTGGACGTCGCGACCGACGGGCTCAAGGCGGTGAGAAGTCTGGTGTCGGCCACCAGCCTGACAAAAAATGGCCTGGC CCTAGCCGGTGGTTACGCCGGGGTAAGTAAGTTGCAGAAAATGGCGACGAAAAATATCACTGATTCGGCGACCAAGGCTG CGGTTAGTCAGCTGAGCAACCTGGTGGGTTCGGTAGGCGTTTTCGCAGGCTGGACCACCGCTGGACTGGCGACTGACCCT GCGGTTAAGAAAGCCGAGTCGTTTATACAGGATAAGGTGAAATCGACCGCATCTAGTACCACAAGCTATGTTGCCGACCA GACCGTCAAACTGGCGAAAACAGTCAAGGACATGAGCGGGGAGGCGATCTCCAGCACCGGTGCCAGCTTACGCAGTACTG TCAATAACCTGCGTCATCGCTCCGCTCCGGAAGCTGATATCGAAGAAGGTGGGATTTCGGCGTTTTCTCGAAGTGAAACA CCGTTTCAGCTCAGGCGTTTGTAA Protein sequence : MHINQSAQQPPGVAMESFRTASDASLASSSVRSVSTTSCRDLQAITDYLKHHVFAAHRFSVIGSPDERDAALAHNEQIDA LVETRANRLYSEGETPATIAETFAKAEKFDRLATTASSAFENTPFAAASVLQYMQPAINKGDWLATPLKPLTPLISGALS GAMDQVGTKMMDRARGDLHYLSTSPDKLHDAMAVSVKRHSPALGRQVVDMGIAVQTFSALNVVRTVLAPALASRPSVQGA VDFGVSTAGGLVANAGFGDRMLSVQSRDQLRGGAFVLGMKDKEPKAALSEETDWLDAYKAIKSASYSGAALNAGKRMAGL PLDVATDGLKAVRSLVSATSLTKNGLALAGGYAGVSKLQKMATKNITDSATKAAVSQLSNLVGSVGVFAGWTTAGLATDP AVKKAESFIQDKVKSTASSTTSYVADQTVKLAKTVKDMSGEAISSTGASLRSTVNNLRHRSAPEADIEEGGISAFSRSET PFQLRRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hopPtoA2 | AAO33453.1 | Hrp-dependent outer protein A2 | Not tested | Not named | Protein | 0.0 | 100 |
| hopAA1-1 | NP_791199.1 | type III effector HopAA1-1 | Virulence | Hrp PAI | Protein | 5e-168 | 79 |
| unnamed | AAF71504.1 | unknown | Not tested | Hrp PAI | Protein | 4e-168 | 79 |
| unnamed | AAT96169.1 | HopPtoA1-like protein | Virulence | T-PAI | Protein | 6e-123 | 63 |
| unnamed | AAT96223.1 | HopPtoA1-like protein | Virulence | T-PAI | Protein | 6e-123 | 63 |
