Gene Information

Name : colR (PSPTO_4374)
Accession : NP_794129.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator ColR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4936655 - 4937338 bp
Length : 684 bp
Strand : -
Note : see PMID:20190049 for expression data

DNA sequence : 
ATGCGAATTCTTCTGGTTGAAGACAACCGCGACATCCTGGCGAACATGGCCGATTATCTGGGCATGAAAGGCTATACCGT
CGATTGCGCCCAGGATGGCCTCTCCGGACTGCACCTGGCGGCCACCGAGCACTATGACCTGATCGTGCTCGACATCATGT
TGCCCGGCATTGACGGCTACACGCTGTGCAAGCGGCTGCGCGAAGACGCCCGTCGCGATACCCCGGTCATCATGCTGACC
GCCCGCGACCAACTGGACGACCGCCTGCAGGGCTTCCGCTCCGGTGCCGATGATTACCTGCTCAAGCCGTTCGCCCTGTC
TGAACTGGCCGCGCGGATCGAAGCGGTGCTGCGTCGTGCCCAGGGCGGGGGACGGCGTACGTTACAGGTAGCCGATCTGG
TGTATGACCTCGATACCCTTGAAGTGACGCGCGAAGGTCGCATGCTCAAGCTCAACCCGGTCGGCCTGAAACTGCTGGCC
GTGCTGATGCAGAAGAGCCCGCATGTGCTGCGCCGCGAAATACTGGAAGAAGCCCTGTGGGGCGACGATTGCCCGGACAG
CGACAGCCTGCGCAGCCATGTGCACCAGTTGCGTCAGGTGATCGACAAACCGTTTGGCAAACCGCTGTTGCAGACCGTGC
ACGGTGTGGGCTATCGCTTGGCCGAGGGCCGGGATGGAGTTTAA

Protein sequence : 
MRILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYTLCKRLREDARRDTPVIMLT
ARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRAQGGGRRTLQVADLVYDLDTLEVTREGRMLKLNPVGLKLLA
VLMQKSPHVLRREILEEALWGDDCPDSDSLRSHVHQLRQVIDKPFGKPLLQTVHGVGYRLAEGRDGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
colR NP_794129.1 DNA-binding response regulator ColR BAC0197 Protein 1e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
colR NP_794129.1 DNA-binding response regulator ColR VFG0596 Protein 1e-35 41