Gene Information

Name : PSPTO_4270 (PSPTO_4270)
Accession : NP_794028.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Unknown
Product : ISPsy4, transposition helper protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 4808966 - 4809775 bp
Length : 810 bp
Strand : +
Note : The annotation of this multicopy IS21 family element is based in part on an HMM match, the ISFinder database, and on positional information.; similar to GP:17865161; identified by sequence similarity; putative

DNA sequence :
ATGAACCTTCAACATGCTCGCCTGACAGAACTATGCAAGGGGCTAAAGCTTGAGCGCGTCGGGGTGGACTGGCCGCACCT
GGCCCAACAAGCAGCAAGCGGCGAAGACAGCTTTGCCGACTTCCTCGAAAAGCTGCTGGCTGCCGAGACCGATGCCCGAA
GTGAACGCTCTCGACAGGCCCTGCTGAAAACTGCCGCGCTGCCCGCTGTGAAAACGCTGGAGCAATACGACTTCGCGTTT
GCCACCGGCGTCCCCCGGGCACAGCTCCAGGAGCTGGCAGCACTGAGTTTTGTTGGACGTGCCGAGAACATCGTGTTCCT
GGGGCCTAGTGGTGTAGGCAAGAGCCACCTGGCTATCGCCCTGGCCTACCGGGCAGTGATGGCCGGTATCAAAACCCGCT
TCGTCACGGCGGCTGACTTGATGCTGCAACTGACCGCTGCGCACCGCCAGGAACGGCTCAAGGAATACTTCAGTCGTGTG
GTGATGGCCCCTGGGTTGTTGGTCATCGATGAAATCGGCTACCTGCCGTTTGGTCGTGATGAAGCCAACCTGTTCTTCAA
TGTTGTCGCCAAGCGCTACGAGCAAGGCAGCCTGATCCTCACGAGTAACTTGCCGTTTACCCAGTGGGCCGGAACCTTTG
CGGATGATCAAACACTGACAGCGGCCATGCTGGACAGGCTGTTACATCATGCCCATATCGTGCAGATGACAGGTGAAAGC
TATCGACTCAAGGACAAGCGCAAAGCAGGAACCAAATCTTCTCGGGCCGAACCGGCTCGAAAATATGAACCCGAGGGGGG
TCAAAACTAA

Protein sequence :
MNLQHARLTELCKGLKLERVGVDWPHLAQQAASGEDSFADFLEKLLAAETDARSERSRQALLKTAALPAVKTLEQYDFAF
ATGVPRAQLQELAALSFVGRAENIVFLGPSGVGKSHLAIALAYRAVMAGIKTRFVTAADLMLQLTAAHRQERLKEYFSRV
VMAPGLLVIDEIGYLPFGRDEANLFFNVVAKRYEQGSLILTSNLPFTQWAGTFADDQTLTAAMLDRLLHHAHIVQMTGES
YRLKDKRKAGTKSSRAEPARKYEPEGGQN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 9e-74 62
unnamed CAA21402.1 - Not tested HPI Protein 1e-73 62
api84 CAF28558.1 putative transposase Not tested YAPI Protein 9e-74 62
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 9e-74 62
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 9e-74 62
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 9e-74 62
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 9e-74 62
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 1e-73 62
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 1e-73 62
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 1e-73 62
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 2e-73 62
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 8e-73 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPTO_4270 NP_794028.1 ISPsy4, transposition helper protein VFG1627 Protein 5e-74 62
PSPTO_4270 NP_794028.1 ISPsy4, transposition helper protein VFG1606 Protein 5e-74 62
PSPTO_4270 NP_794028.1 ISPsy4, transposition helper protein VFG1515 Protein 5e-74 62
PSPTO_4270 NP_794028.1 ISPsy4, transposition helper protein VFG1663 Protein 5e-73 61