|
Name : PSPTO_4060 (PSPTO_4060) Accession : NP_793822.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Unknown Product : ISPsy6, transposase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3666 EC number : - Position : 4566810 - 4568270 bp Length : 1461 bp Strand : - Note : identified by match to PFAM protein family HMM PF01609 DNA sequence : ATGCTCCGTATCGAAAGATACAGAGCATTTTTCGTTATGGCCTACATCCAAGGTGAGTCCCGCAGCCAGACCAGCCTATT CCCGGTCTCGCTGGAAGAGTTGATCCCCGAGGATCACCTCGTTCGTGTCATTGACCTGTACGTTGCCAAGCTCGATCTGG TGCAACTGGGCTTCGATAAAGCGATTCCAAAAAGCACGGGGCGCCCTGCTTATGATCCCGCCGATCAGCTAAAACTCTAC CTCTACGGCTATTTTCAGCGGATTCGCTCATCGCGACGTCTTGAAGCCGAGTGTCAGCGCAACATCGAAGTGATGTGGCT GATCAACCGGCTCAAGCCCGACTTCAAGACCATCGCCGACTTTCGCAAGAACAATAAACCCGCCTTCATCGCGACCTGCC GTGCTTTCGTTCGATTTTGTCGCACAGCAGGCTTGATCGCCGGTGAATTGGTGGCCATCGACGGCAGCAAGTTTCAGGCG GTCGCCTCCTCACGGCGTCATGTGAATTTGAAGCAGCTCAAGCGCCAGGAAGAAAAACTGGATAAGCGCATCGCTCAGTA TCTGGCCGAGCTGGATGAGGCCGACAAGGCTGAAACCACAGATTCAATTGATCGCAGCGCAATCAAAGCAGCACTGGCAC AGCTTGAGGCTCGACAACAGGATAATCAGAGTTGCCAGGCACTGATGCGTTCGATGGGCATCGAGCAGTTCAACACTCAT GAAAGCGATGCCCGAATGATGCGCACGGCCAAAGGGCCACGTGTGGCCTACAACGTGCAAACCGTCGTGGACGCCGAGCA TTGCCTGATTTTGCATCATGAGGTCACCCAGGATGGCGATGACCGAAAGCAACTGGAGCCGATGGCCAAGGCCGCCAAAG CAGAGTTACAGCAAGATGAGCTGACGGTCACTGCCGATGCCGGCTACTCCAATGGCAAGCAGTTTCAGGCCTGCGAGGAT GCTTCGATTACGGCCTATGTACCGCCCAATCGTTCGAAAAACCCTGGCAGTCATGAAGAGCAGCTCTTTGAGCGAAAAGA CTTTATCTATGAGGCCGGACACGATCGTTTCCAGTGTCCGGCAGGCAAATGGTTAACGCTAAAACAGCACAACAAAGGTG ATCGGATCTATCAGGCTGAGGTCGATGACTGCGCCAACTGCGCGCTGAAAACGCAATGCACTCGAGCCCAGCGCCGTTAT GTCTCACGACATGCCCATGAAGAGGCTTTCGAGCGGATGGAGCAAAGAATGCAGGCGCATCCTGAGATGATGGCCAACCG AAGATCCATCGTTGAGCACCCCTTCGGCAACCTCAAGCAATGGCTATTTGGTAATGGCCGTTTCTTGCTGCGACAACTGG AGGGGACAAAAGCTGAAATGGCCTTGGCGGTGAATGCTTATAACCTGAAACGAGCGATTAAAGTGCTCGGTGTGCGCCAT CTGATGGCTTTGATGGGCTGA Protein sequence : MLRIERYRAFFVMAYIQGESRSQTSLFPVSLEELIPEDHLVRVIDLYVAKLDLVQLGFDKAIPKSTGRPAYDPADQLKLY LYGYFQRIRSSRRLEAECQRNIEVMWLINRLKPDFKTIADFRKNNKPAFIATCRAFVRFCRTAGLIAGELVAIDGSKFQA VASSRRHVNLKQLKRQEEKLDKRIAQYLAELDEADKAETTDSIDRSAIKAALAQLEARQQDNQSCQALMRSMGIEQFNTH ESDARMMRTAKGPRVAYNVQTVVDAEHCLILHHEVTQDGDDRKQLEPMAKAAKAELQQDELTVTADAGYSNGKQFQACED ASITAYVPPNRSKNPGSHEEQLFERKDFIYEAGHDRFQCPAGKWLTLKQHNKGDRIYQAEVDDCANCALKTQCTRAQRRY VSRHAHEEAFERMEQRMQAHPEMMANRRSIVEHPFGNLKQWLFGNGRFLLRQLEGTKAEMALAVNAYNLKRAIKVLGVRH LMALMG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnpA | ACY75519.1 | transposase | Not tested | Tn6060 | Protein | 3e-103 | 45 |
| tnpA | ACY75536.1 | transposase | Not tested | Tn6060 | Protein | 3e-103 | 45 |
| unnamed | CAD91340.1 | hypothetical protein | Not tested | Not named | Protein | 3e-103 | 45 |
| ORF SG74 | AAN62296.1 | transposase domain protein | Not tested | PAGI-3(SG) | Protein | 3e-104 | 45 |
