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Name : kdsB (PSPTO_3843) Accession : NP_793615.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Virulence Product : 3-deoxy-D-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : - Position : 4351944 - 4352708 bp Length : 765 bp Strand : - Note : see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02348 DNA sequence : ATGACGGCAGCGTTCACCGTTGTCATCCCGGCGCGTTACGGCTCCAGCCGCTTCCCCGGCAAACCGCTGAAAACCATTGC TGGCAAACCTATGGTTCAGCTTGTCTGGGAGCAGGCGCGCAAAAGCAGTGCCGAGCGCGTGGTGATCGCCACCGATGATG CGCGCATCGTCGAGGCTTGCCGCGCATTTGGCGCCGAAGTATTGCTGACCCGCGATGATCATAATTCCGGCACCGACCGG CTGGCTGAGGTGGCCACGCAACTGGGGCTGGCAGCTAACGCGATTGTGGTCAATGTTCAGGGCGACGAGCCGCTGATCCC GCCTGCGGTGATCGATCAGGTGGCGGCCAATCTGGCGAAGCATCCCGAGGCTGGCATGGCGACACTGGCCGAGCCCATCG ACGATGTGGCTGCGCTGTTCAACCCCAATATCGTCAAGGTCTCGACCGACATCAATGGCCTGGCGTTGACGTTCAGTCGC GCGCCGTTGCCCTGGGCGCGTGATGCGTTGGCCAGAAGCAAGGACGAGTTGCCTGCAGACGTGCCGTATCGTCGTCATAT CGGCATCTATGCCTACCGTGCGGGCTTTCTGCATGACTTCGTCAGTTGGGGGCCGTGCTGGCTGGAAAACACCGAAAGCC TCGAGCAACTGCGTGCGCTGTGGAATGGCGTCCGCATCCACGTCGCCGATGCACTTGAAGCGCCACCGGGTGGTGTCGAC ACCCCCGAAGACCTTGAGCGCGTAAGACGCCTTCTGGAGGCGTGA Protein sequence : MTAAFTVVIPARYGSSRFPGKPLKTIAGKPMVQLVWEQARKSSAERVVIATDDARIVEACRAFGAEVLLTRDDHNSGTDR LAEVATQLGLAANAIVVNVQGDEPLIPPAVIDQVAANLAKHPEAGMATLAEPIDDVAALFNPNIVKVSTDINGLALTFSR APLPWARDALARSKDELPADVPYRRHIGIYAYRAGFLHDFVSWGPCWLENTESLEQLRALWNGVRIHVADALEAPPGGVD TPEDLERVRRLLEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 4e-38 | 43 |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 3e-38 | 43 |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 5e-38 | 43 |
