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Name : PSPTO_3720 (PSPTO_3720) Accession : NP_793494.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Unknown Product : ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : - Position : 4199188 - 4200798 bp Length : 1611 bp Strand : + Note : see PMID:20190049 for expression data DNA sequence : ATGAACAACGACAATCTGATCGAAATCCGCGATCTGGCGGTCGAGTTCGTGACGGGCGACTCGCGGCAACGGGTGGTCGA GAACATCAGCTTCGATATTCGTCGCGGTGAAACCCTGGCGCTGGTAGGCGAAAGCGGCTCGGGCAAATCGGTCACCGCGC ATTCGATTCTGCGTCTGCTGCCCTACCCCATCGCCAGCCACCCGAGCGGCACCATTCACTATGCGGGCGAAGACCTGCTG AAAGCAGAAGAGAAAAAACTGCGCTCGATCCGTGGCAACCGCATTGCCATGATCTTCCAGGAGCCGATGACCTCACTCAA CCCGCTGCATTCGGTCGAAAAGCAGATTAACGAGGTGCTAGGCCTGCACAAGGGGCTGACCGGTAAGGCGGCCACAGCAC GCACGCTGGAGCTTCTGGAACTGGTCGGCATCCCTGAGCCACATAAACGCCTCAAAGCCCTGCCACACGAGCTATCAGGC GGCCAGCGCCAGCGCGTGATGATTGCCATGGCGCTGGCCAACGAACCCGAGCTGCTGATTGCCGACGAACCGACCACTGC GCTGGATGTCACGGTACAGCTGAAAATCCTCGAATTGCTCAAGCAATTGCAGGCTCGACTGGGCATGGCACTGTTGCTGA TCAGCCACGACCTCAACGTGGTGAGGCAAATAGCCAACCGAGTATGTGTCATGCAGCGCGGTTGCATCGTCGAACAGGCA TCGTGCGAAGAATTGTTCCGTTCGCCGCAACATCCTTATACCAAAGTGTTGCTCAGCGCAGAGCCCAGCGGCGGTCCTTC GACCAACCCGGCCGGTGCTCCGCTGCTCGAGGTCGAGGACCTGAAAGTCTGGTTCCCGATCAAAAAAGGCCTGCTCAAGC GCACGGTCGACCACGCCAAGGCGGTGGACGGCATTGGCTTCAGTCTGCCGCAAGGGCAAACACTGGGTATCGTGGGCGAA AGCGGGTCGGGCAAATCGACGCTGGGGCTGGCGATTCTACGACTGATTGGCAGCCAGGGCACCATACGTTTCAAGGGCAA CGCGCTAGAATCTCTGTCGCAACAGCAAATCCGACCGTTGCGCAGGCAGATGCAGGTGGTGTTCCAGGACCCGTTTGGCA GTTTGAGCCCGCGCATGTCGGTGGGTGAAATCGTCGGCGAAGGCTTGCGCATCCACGGCATGGGCACGCCTGCCGAGCAG CAGACGGCGATCATCGAAGCACTCAGGGAGGTTGGCCTGGATCCGGACACCCGGCACCGCTATCCCCATGAATTCTCTGG TGGTCAGCGGCAGCGAATTGCCATTGCCCGGGCGCTGGTGCTCAAACCGGCGCTGATTCTGCTGGACGAGCCGACCTCGG CCCTCGACCGGACCGTGCAGCGCCAGGTGGTCGAATTGCTTCGCTCGCTGCAAACCAAGTACAACCTGACATATTTGTTC ATCAGCCATGACCTGGCTGTCGTCAAAGCGCTGAGCCACCAACTGATGGTGGTCAAGCAAGGCCAAGTGGTCGAACAGGG TGCAGCGCAGGAAATCTTCGCCGCACCGCAACATCCTTATACACAGCAGCTGCTGGAGGCCGCTTTTCTAGCCCCCGTAG CTGTCGATTAA Protein sequence : MNNDNLIEIRDLAVEFVTGDSRQRVVENISFDIRRGETLALVGESGSGKSVTAHSILRLLPYPIASHPSGTIHYAGEDLL KAEEKKLRSIRGNRIAMIFQEPMTSLNPLHSVEKQINEVLGLHKGLTGKAATARTLELLELVGIPEPHKRLKALPHELSG GQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELLKQLQARLGMALLLISHDLNVVRQIANRVCVMQRGCIVEQA SCEELFRSPQHPYTKVLLSAEPSGGPSTNPAGAPLLEVEDLKVWFPIKKGLLKRTVDHAKAVDGIGFSLPQGQTLGIVGE SGSGKSTLGLAILRLIGSQGTIRFKGNALESLSQQQIRPLRRQMQVVFQDPFGSLSPRMSVGEIVGEGLRIHGMGTPAEQ QTAIIEALREVGLDPDTRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQTKYNLTYLF ISHDLAVVKALSHQLMVVKQGQVVEQGAAQEIFAAPQHPYTQQLLEAAFLAPVAVD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 1e-77 | 42 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 1e-77 | 42 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 1e-77 | 42 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 1e-77 | 42 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 4e-94 | 41 |
