Gene Information

Name : PSPTO_0378 (PSPTO_0378)
Accession : NP_790227.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 418542 - 419216 bp
Length : 675 bp
Strand : +
Note : see PMID:20190049 for expression data

DNA sequence : 
ATGCGAATCCTTGTCGTCGAGGACGAGCCGAAAACTGCCGAGTACATGCATCAGGGTCTGACCGAGAGTGGCTATGTCGT
CGATATCGCCGCCACCGGGCTCGATGGGCTCTACCTCGCGCAGCATCAGGCTTACGATGTGGTGATACTGGACGTGAACC
TGCCGGAAATGGACGGCTGGGAAGTGCTGAGCCGCCTGAGAAAAACCGTCAATACGCGCATCATGATGGTCACGGCACGG
GGGCGTCTGGAAGAAAAGGTCAAAGGCCTGGAAATGGGCGCAGACGACTATTTGGTCAAGCCGTTTGAATTTCCCGAGCT
GCTGGCGCGGGTTCGCACCCTCATGCGCCGCAGCGAGCAGACCACCACCGCCAAAGTGTTGCAGGTCGGCGACCTGGAGC
TCGATCAGGGTCGGCACCGGGCGTTTCGCGGCAAGCAGCGTATTGATCTGACCACCAAGGAGTTCGCGCTGCTGCACCTG
TTGATGCGCCACAGCGGCGAGGTCATGTCGCGCACCCAGATTATCTCGTTGGTATGGGACATGAACTTCGATTGCGACAC
CAACGTGGTGGAAGTGTCGATCCGCCGCTTGCGGGCGAAGATCGATGATCCGTTCGAGACCAAGCTGATTCACACCCTGC
GCGGCGTGGGCTATGTGCTGGAAGTGCGCGAATGA

Protein sequence : 
MRILVVEDEPKTAEYMHQGLTESGYVVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGWEVLSRLRKTVNTRIMMVTAR
GRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHL
LMRHSGEVMSRTQIISLVWDMNFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEVRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-55 52
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-55 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator BAC0083 Protein 3e-62 59
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator BAC0125 Protein 4e-65 59
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator BAC0197 Protein 3e-64 58
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator BAC0638 Protein 3e-55 56
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator BAC0308 Protein 5e-59 55
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator BAC0111 Protein 2e-62 54
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator BAC0347 Protein 1e-56 51
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator NC_007793.3914065.p0 Protein 6e-37 42
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator NC_002758.1121390.p0 Protein 6e-37 42
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator NC_010079.5776364.p0 Protein 6e-37 42
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator NC_002952.2859858.p0 Protein 6e-37 42
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator NC_007622.3794948.p0 Protein 6e-37 42
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator NC_003923.1003417.p0 Protein 6e-37 42
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator NC_013450.8614146.p0 Protein 6e-37 42
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator NC_002951.3238224.p0 Protein 6e-37 42
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator AE015929.1.gene1106. Protein 6e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator VFG0596 Protein 6e-56 52
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator VFG1390 Protein 5e-39 43
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator VFG1389 Protein 5e-35 43
PSPTO_0378 NP_790227.1 DNA-binding heavy metal response regulator VFG1386 Protein 2e-36 41