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Name : PSPTO_3608 (PSPTO_3608) Accession : NP_793387.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Unknown Product : ISPsy4, transposase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4584 EC number : - Position : 4066983 - 4068005 bp Length : 1023 bp Strand : - Note : The annotation of this multicopy IS21 family element is based in part on an HMM match, the ISFinder database, and on positional information.; similar to GP:14594862, and GP:17865160; identified by sequence similarity; putative DNA sequence : ATGTTGACCCAGGAGCAGTCTGTGGAAATTAAAGTGTTGGCCCGTCAGGGCCATGGCATCAAATTCATCGCCCGTGAGCT GGGTATTTCGCGTAACACCGTGCGCAAGTACCTGCGAAAGGCCCGGTCGCTACCCAGTGACAAGGTGAGACCCGCACGTC CGTGCAAAATCGACCCCTTCAAGGACTACCTGCACGAGCGTATTGAGGCGGCGCGCCCACACTGGATTCCGGCGACCGTC CTGCTGCGTGAGATCACGGCATTGGGGTACAGCGGCGGCGTCAGTCGTCTGAAGGCTTATATTCGCCCCTTCAAACGTAA GGCAGAAGAGCCGGTGGTACGTTTCGAGACACTGCCCGGCAAGCAGATACAGGTGGACTTCACCACCATTCGACGAGGCC GTCAGCCGCTTAAGGCGTTCGTGGCGACACTTGGTTTTAGTCGAGCAAGCTTTGTCCGTTTCTCCGAGCGAGAGGACAGC GAAGCCTGGCTGACAGGGCTTCGGGAGGCGTTCGCTTACTTTGGCGGCGTGCCCGAGCAGGCATTGTTTGATAACGCCGG AACCATCATCACCGAGCGAGATGCTTTTGGGGAGGGCCAGCACCGTTGGCATCCCCGATTGGCTGCGCTGGCCGATGAGT TTGGTTTTATTCCCAAGGTCTGCCGCCCTTACCGTGCCCAGACCAAGGGCAAGGTTGAGCGCTTCAACGGGTATCTGAAG GGCAGTTTCATTACCCCGTTGGCCGCTACGCTCAAGAGTGCGGGTCTGACGCTGGATGTGGTGACGGCCAACGCACATAT CGGCCAATGGCTCGACGAAGTCGCTCATCAGCGGATTCACGGCACGACGGGTGTTCAACCGGCGGTACGTCTGGCCCAAG AGCAGCAGGTACTATTACCACTGCCAACACAGAGCCTGCGCCCACAACCCGCCCAAGGCCTACGCCTGGGACGGGTCCTG CCGTACGAGAGCTTGCAGCATCCGCTGTCGGTTTATGAGCAACTGCTGGAGGTGAGAGCATGA Protein sequence : MLTQEQSVEIKVLARQGHGIKFIARELGISRNTVRKYLRKARSLPSDKVRPARPCKIDPFKDYLHERIEAARPHWIPATV LLREITALGYSGGVSRLKAYIRPFKRKAEEPVVRFETLPGKQIQVDFTTIRRGRQPLKAFVATLGFSRASFVRFSEREDS EAWLTGLREAFAYFGGVPEQALFDNAGTIITERDAFGEGQHRWHPRLAALADEFGFIPKVCRPYRAQTKGKVERFNGYLK GSFITPLAATLKSAGLTLDVVTANAHIGQWLDEVAHQRIHGTTGVQPAVRLAQEQQVLLPLPTQSLRPQPAQGLRLGRVL PYESLQHPLSVYEQLLEVRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| y1094 | CAD42088.1 | OrfA protein of IS100 transposase | Not tested | PAI II 536 | Protein | 3e-68 | 46 |
| orfA | CAE85182.1 | OrfA protein, transposase, IS100 | Not tested | PAI V 536 | Protein | 3e-68 | 46 |
| y1094 | CAC43410.1 | IS100 transposase; transposase ORFA | Not tested | PAI III 536 | Protein | 3e-68 | 46 |
| y1093 | CAD33720.1 | ORF A protein | Not tested | PAI I 536 | Protein | 6e-68 | 46 |
| s0035 | CAD33773.1 | ORF A protein | Not tested | PAI I 536 | Protein | 3e-68 | 46 |
| y1093 | YP_002346890.1 | transposase for insertion sequence IS100 | Not tested | HPI | Protein | 1e-67 | 46 |
| y2411 | NP_669718.1 | transposase | Not tested | HPI | Protein | 1e-67 | 46 |
| YPTB1585 | YP_070113.1 | transposase | Not tested | HPI | Protein | 1e-67 | 46 |
| unnamed | CAA21403.1 | - | Not tested | HPI | Protein | 1e-67 | 46 |
| unnamed | CAB46599.1 | IS100 transposase | Not tested | HPI | Protein | 1e-67 | 46 |
| api83 | CAF28557.1 | transposase | Not tested | YAPI | Protein | 1e-67 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PSPTO_3608 | NP_793387.1 | ISPsy4, transposase | VFG1626 | Protein | 2e-68 | 46 |
| PSPTO_3608 | NP_793387.1 | ISPsy4, transposase | VFG1607 | Protein | 2e-68 | 46 |
| PSPTO_3608 | NP_793387.1 | ISPsy4, transposase | VFG1461 | Protein | 3e-68 | 46 |
| PSPTO_3608 | NP_793387.1 | ISPsy4, transposase | VFG1514 | Protein | 2e-68 | 46 |
