Gene Information

Name : PSPTO_3603 (PSPTO_3603)
Accession : NP_793382.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4062841 - 4063530 bp
Length : 690 bp
Strand : +
Note : -

DNA sequence :

ATGCATATCCTGCTGATTGAAGACGACACCAAGACCGGCGAGTACCTGAAGAAGGGCCTGGGCGAATCCGGCTATAAGGT
GGACTGGACCCAGCACGGCGCCGACGGCCTGCACCTGGCGCTGGAAAACCGCTACGACCTGATCGTGCTGGACGTGATGT
TGCCCGGTATCGACGGCTGGCAGATCATCGAAGTGCTGCGCGCCCGGCAGGACGTGCCGGTGTTGTTCCTGACCGCCCGC
GATCAATTGCAGGACCGGATTCGCGGCCTGGAGCTGGGCGCCGACGATTACCTGGTCAAGCCGTTTTCCTTCACTGAACT
GCTGCTGCGCATTCGCACCATCCTGCGCCGTGGCGTGGTGCGCGAGGCCGATCACTTTCATCTGGCCGACCTGGAACTCG
ACCTGTTGCGCCGCCGCGTGACACGTCAGCAACAGGTCATCGTGCTGACCAACAAGGAGTTCGCCCTGCTGCACCTTTTG
TTGCGCCGCGAAGGCGATGTGCTGTCACGGGCACAGATTGCCTCGGAAGTCTGGGACATGAATTTCGACAGCGACACCAA
TGTAGTGGACGTCGCCATCAAGCGCCTGCGCAGCAAGGTCGACCTGCCCTACCCGGTCAAGCTCATTCACACCGTGCGCG
GCATCGGTTATGTGTGCGAGGTGCGGCCATGCGACGCCAGCCTTCCCTGA

Protein sequence :

MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGWQIIEVLRARQDVPVLFLTAR
DQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVVREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLL
LRREGDVLSRAQIASEVWDMNFDSDTNVVDVAIKRLRSKVDLPYPVKLIHTVRGIGYVCEVRPCDASLP

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
copR	NP_460069.2	transcriptional regulatory protein YedW	Not tested	SPI-5	Protein	5e-45	56
copR	AAC33719.1	regulatory protein CopR	Not tested	SPI-5	Protein	6e-44	56

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PSPTO_3603	NP_793382.1	DNA-binding heavy metal response regulator	BAC0197	Protein	4e-56	64
PSPTO_3603	NP_793382.1	DNA-binding heavy metal response regulator	BAC0125	Protein	1e-54	62
PSPTO_3603	NP_793382.1	DNA-binding heavy metal response regulator	BAC0083	Protein	2e-48	59
PSPTO_3603	NP_793382.1	DNA-binding heavy metal response regulator	BAC0308	Protein	5e-47	58
PSPTO_3603	NP_793382.1	DNA-binding heavy metal response regulator	BAC0638	Protein	7e-43	57
PSPTO_3603	NP_793382.1	DNA-binding heavy metal response regulator	BAC0111	Protein	3e-50	57
PSPTO_3603	NP_793382.1	DNA-binding heavy metal response regulator	BAC0347	Protein	2e-42	53

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PSPTO_3603	NP_793382.1	DNA-binding heavy metal response regulator	VFG0596	Protein	2e-45	56
PSPTO_3603	NP_793382.1	DNA-binding heavy metal response regulator	VFG1390	Protein	5e-27	43
PSPTO_3603	NP_793382.1	DNA-binding heavy metal response regulator	VFG1389	Protein	6e-24	43
PSPTO_3603	NP_793382.1	DNA-binding heavy metal response regulator	VFG1386	Protein	6e-24	41