Gene Information

Name : PSPTO_3297 (PSPTO_3297)
Accession : NP_793080.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3728312 - 3728995 bp
Length : 684 bp
Strand : +
Note : see PMID:20190049 for expression data

DNA sequence : 
ATGACCCGAATTCTGGCAATCGAAGATGATGCCATCACCGCAAAGGAAATTGTCACCGAACTCAGCAGCCACGGGCTGGA
AGTGGACTGGGTGGACAACGGCCGTGACGGCCTGGCGCGTGCAGTGAGCGGCGACTACGACCTCATTACCCTGGACCGCA
TGCTGCCGGAGATGGATGGCCTGACCATCGTCACCCACCTGCGTGCCCAGGGCATTTCCACGCCGATCCTGATGATCAGC
GCGCTGTCCGATGTGGACGAACGCGTACGCGGGCTAAGGGCCGGAGGCGATGATTATCTGCCCAAACCGTTCGCGTCGGA
CGAAATGGCAGCACGCGTCGAGGTCCTTCTGCGCCGCAGCAACCCGGTCAGCGCGGCCAAGACCGTGTTGCAGGTTGCCG
ACCTGGAGCTGAACCTGATCAGCCGCGAAGCCTGTCGGGGGGGTGAGCCGTTGATCCTGCTGCCCACCGAGTTCAAGCTG
CTGGAATTTCTGATGCGCAACAGCGGGCAAATCATCACGCGCATGATGATCTTCCAGGAAGTATGGGGCTATCACTTCGA
CCCGGGCACCAACCTGATCGATGTGCACATCGGCCGTCTGCGCAAGAAGATCGATCAACCTGGCACCGCACAGCTGATCC
AGACCGTGCGAGGGTCAGGTTATGTCATTGCCGAACCCGTCTAA

Protein sequence : 
MTRILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLTIVTHLRAQGISTPILMIS
ALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAAKTVLQVADLELNLISREACRGGEPLILLPTEFKL
LEFLMRNSGQIITRMMIFQEVWGYHFDPGTNLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVIAEPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-33 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPTO_3297 NP_793080.1 DNA-binding heavy metal response regulator BAC0111 Protein 8e-45 46
PSPTO_3297 NP_793080.1 DNA-binding heavy metal response regulator BAC0125 Protein 3e-41 46
PSPTO_3297 NP_793080.1 DNA-binding heavy metal response regulator BAC0197 Protein 3e-43 46
PSPTO_3297 NP_793080.1 DNA-binding heavy metal response regulator BAC0308 Protein 3e-41 44
PSPTO_3297 NP_793080.1 DNA-binding heavy metal response regulator BAC0347 Protein 1e-42 44
PSPTO_3297 NP_793080.1 DNA-binding heavy metal response regulator HE999704.1.gene1528. Protein 5e-28 42
PSPTO_3297 NP_793080.1 DNA-binding heavy metal response regulator BAC0083 Protein 3e-42 42
PSPTO_3297 NP_793080.1 DNA-binding heavy metal response regulator BAC0638 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPTO_3297 NP_793080.1 DNA-binding heavy metal response regulator VFG1390 Protein 5e-40 43
PSPTO_3297 NP_793080.1 DNA-binding heavy metal response regulator VFG0596 Protein 2e-33 42